LOCUS BC034346 2674 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens nucleoporin 93kDa, mRNA (cDNA clone MGC:21106
IMAGE:4750923), complete cds.
ACCESSION BC034346
VERSION BC034346.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2674)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2674)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-JUL-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: James Cleaver, M.D.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 28 Row: o Column: 3
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 41281436
This clone grew slowly and was rescued by PCR.
FEATURES Location/Qualifiers
source 1..2674
/db_xref="H-InvDB:HIT000042100"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:21106 IMAGE:4750923"
/tissue_type="Skin, squamous cell carcinoma"
/clone_lib="NCI_CGAP_Skn4"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6.1"
gene 1..2674
/gene="NUP93"
/gene_synonym="KIAA0095"
/gene_synonym="MGC21106"
/db_xref="GeneID:9688"
/db_xref="HGNC:HGNC:28958"
CDS 32..2491
/gene="NUP93"
/gene_synonym="KIAA0095"
/gene_synonym="MGC21106"
/codon_start=1
/product="nucleoporin 93kDa"
/protein_id="AAH34346.1"
/db_xref="GeneID:9688"
/db_xref="HGNC:HGNC:28958"
/translation="MDTEGFGELLQQAEQLAAETEGISELPHVERNLQEIQQAGERLR
SRTLTRTSQETADVKASVLLGSRGLDISHISQRLESLSAATTFEPLEPVKDTDIQGFL
KNEKDNALLSAIEESRKRTFGMAEEYHRESMLVEWEQVKQRILHTLLASGEDALDFTQ
ESEPSYISDVGPPGRSSLDNIEMAYARQIYIYNEKIVNGHLQPNLVDLCASVAELDDK
SISDMWTMVKQMTDVLLTPATDALKNRSSVEVRMEFVRQALAYLEQSYKNYTLVTVFG
NLHQAQLGGVPGTYQLVRSFLNIKLPAPLPGLQDGEVEGHPVWALIYYCMRCGDLLAA
SQVVNRAQHQLGEFKTWFQEYMNSKDRRLSPATENKLRLHYRRALRNNTDPYKRAVYC
IIGRCDVTDNQSEVADKTEDYLWLKLNQVCFDDDGTSSPQDRLTLSQFQKQLLEDYGE
SHFTVNQQPFLYFQVLFLTAQFEAAVAFLFRMERLRCHAVHVALVLFELKLLLKSSGQ
RAQLLSHEPGDPPCLRRLNFVRLLMLYTRKFESTDPREALQYFYFLRDEKDSQGENMF
LRCVSELVIESREFDMILGKLENDGSRKPGVIDKFTSDTKPIINKVASVAENKGLFEE
AAKLYDLAKNADKVLELMNKLLSPVVPQISAPQSNKERLKNMALSIAERYRAQGISAN
KFVDSTFYLLLDLITFFDEYHSGHIDRAFDIIERLKLVPLNQESVEERVAAFRNFSDE
IRHNLSEVLLATMNILFTQFKRLKGTSPSSSSRPQRVIEDRDSQLRSQARTLITFAGM
IPYRTSGDTNARLVQMEVLMN"
BASE COUNT 689 a 639 c 710 g 636 t
ORIGIN
1 gacggctgta gcacaaggat ctgcatctcc aatggatact gaggggtttg gtgagctcct
61 tcagcaagct gaacagcttg ctgctgagac tgagggcatc tcagagcttc cccatgtgga
121 acggaactta caggagatcc agcaggcggg agagcgcctg cgttcccgta ccctaacacg
181 cacgtcccag gagacggcag atgtcaaggc gtcagttctc ctcgggtctc ggggacttga
241 catatcccac atctcccagc gattggagag tctgagtgca gccaccacct ttgagcctct
301 tgagcctgtg aaggacactg acattcaggg cttcctgaag aatgagaagg acaatgccct
361 gctgtctgcc atcgaagagt cccggaagag gaccttcggc atggctgagg agtaccatcg
421 ggagtcaatg ttggttgagt gggagcaagt gaaacagcga attctgcaca cactgctggc
481 atcaggagaa gacgcccttg actttactca agaaagcgag ccaagctaca tcagtgatgt
541 gggaccccct ggtcgaagct ctctggataa catcgagatg gcctatgcgc ggcaaattta
601 tatctataat gagaaaattg taaatggaca cctgcagcct aacctggtgg acctttgtgc
661 ttccgtcgca gagctcgatg ataagagcat ttccgacatg tggaccatgg taaaacaaat
721 gacagacgtg ttgttgacac cggcaacgga tgccctgaag aaccgcagca gcgtggaagt
781 gcgcatggag tttgtcaggc aggccttggc gtaccttgag cagagttata agaattacac
841 ccttgtgact gtctttggaa atttgcatca ggcccagctg ggcggggtgc ctgggactta
901 ccaattggtt cgaagtttcc tgaacattaa actgccagct cccttgcctg gactacagga
961 tggagaggtg gaaggccatc ctgtgtgggc gctaatttac tactgcatgc gctgtggaga
1021 cctgcttgcc gcttcacagg tagttaatcg agcccagcac cagctgggag agtttaaaac
1081 ctggttccag gagtacatga acagcaagga cagaagattg tccccagcta cggaaaacaa
1141 gctccggctg cattaccgta gggccctcag gaacaataca gatccctaca agcgggccgt
1201 gtactgtatc attggcagat gtgacgtcac cgacaaccag agtgaagtgg cggacaaaac
1261 tgaggattac ctgtggctga agttgaacca agtgtgtttt gacgacgatg gcaccagctc
1321 cccacaagac aggctcactc tctcacagtt ccagaagcag ttgttggaag actatggcga
1381 gtcccacttt acggtgaacc agcaaccctt cctctacttc caagtcctgt tcctgacagc
1441 gcagtttgaa gcagcagttg cctttctttt ccgcatggag cggctgcgct gccatgctgt
1501 ccatgtagca ctggtgctgt ttgagctgaa gctgctttta aagtcctctg gacagagggc
1561 tcagctcctc agccacgagc ctggtgaccc tccttgcttg cggcggctga acttcgtgcg
1621 gctcctcatg ctgtacaccc ggaagtttga gtccacggac ccaagggagg ccctccagta
1681 cttctatttc ctcagggatg agaaagatag tcaaggagaa aacatgtttc tgcgctgtgt
1741 gagtgagctt gtgattgaaa gccgagagtt cgatatgatt cttgggaaac tagagaatga
1801 cggaagtaga aagcctggag tcatagataa gtttactagt gacacaaagc ctattatcaa
1861 caaagttgct tctgtggcag aaaataaagg actgtttgaa gaggcagcaa agctgtatga
1921 ccttgccaag aatgctgaca aggtactgga gctgatgaac aaactgctga gccctgtcgt
1981 cccccagatc agtgccccgc aatccaacaa ggagaggctg aagaacatgg cactctccat
2041 tgccgaacgg tatagggctc aaggaataag cgcaaataaa tttgtggact ccacgttcta
2101 tcttcttttg gacttgatca ccttttttga cgagtatcat agtggtcata ttgatagagc
2161 ttttgatatc attgagcgct tgaagctggt gcccctgaat caggaaagtg tggaagagag
2221 agtggctgcc ttcagaaatt tcagtgatga aatcaggcac aacctctcag aagtgcttct
2281 tgccaccatg aacatcttgt tcacacagtt taagaggctc aaggggacaa gtccatcctc
2341 gtcatccagg ccccagcgag tcatcgagga ccgcgactct caactccgaa gtcaagcccg
2401 cactctgatt acctttgctg gaatgatacc ataccgaacg tctggggaca ccaatgcgag
2461 gctggtgcag atggaggtcc tcatgaatta agtgccatgc tttgtgggag tctgggtcgg
2521 cacactgtca gtacatcagg cacatgggcc cactaggctg gggtttctgg ttttgtttct
2581 gttgtgtttt gttttggttt ctgtattatg tatttttgtc aacgccaata aatttctttg
2641 atttgtaaaa aaaaaaaaaa aaaaaaaaaa aaaa
//