LOCUS BC034321 1749 bp mRNA linear HUM 04-AUG-2008
DEFINITION Homo sapiens aldehyde dehydrogenase 5 family, member A1, mRNA (cDNA
clone MGC:41874 IMAGE:4829533), complete cds.
ACCESSION BC034321
VERSION BC034321.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1749)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1749)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-JUL-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 72 Row: f Column: 15
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 25777719.
FEATURES Location/Qualifiers
source 1..1749
/db_xref="H-InvDB:HIT000042095"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:41874 IMAGE:4829533"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..1749
/gene="ALDH5A1"
/gene_synonym="SSADH"
/gene_synonym="SSDH"
/db_xref="GeneID:7915"
/db_xref="HGNC:HGNC:408"
/db_xref="MIM:610045"
CDS 29..1636
/gene="ALDH5A1"
/gene_synonym="SSADH"
/gene_synonym="SSDH"
/codon_start=1
/product="aldehyde dehydrogenase 5 family, member A1"
/protein_id="AAH34321.1"
/db_xref="GeneID:7915"
/db_xref="HGNC:HGNC:408"
/db_xref="MIM:610045"
/translation="MATCIWLRSCGARRLGSTFPGCRLRPRAGGLVPASGPAPGPAQL
RCYAGRLAGLSAALLRTDSFVGGRWLPAAATFPVQDPASGAALGMVADCGVREARAAV
RAAYEAFCRWREVSAKERSSLLRKWYNLMIQNKDDLARIITAESGKPLKEAHGEILYS
AFFLEWFSEEARRVYGDIIHTPAKDRRALVLKQPIGVAAVITPWNFPSAMITRKVGAA
LAAGCTVVVKPAEDTPFSALALAELASQAGIPSGVYNVIPCSRKNAKEVGEAICTDPL
VSKISFTGSTTTGKILLHHAANSVKRVSMELGGLAPFIVFDSANVDQAVAGAMASKFR
NTGQTCVCSNQFLVQRGIHDAFVKAFAEAMKKNLRVGNGFEEGTTQGPLINEKAVEKV
EKQVNDAVSKGATVVTGGKRHQLGKNFFEPTLLCNVTQDMLCTHEETFGPLAPVIKFD
TEEEAIAIANAADVGLAGYFYSQDPAQIWRVAEQLEVGMVGVNEGLISSVECPFGGVK
QSGLGREGSKYGIDEYLELKYVCYGGL"
BASE COUNT 399 a 449 c 504 g 397 t
ORIGIN
1 gtttcctgtc gccgtcgttg cccgggccat ggcgacctgc atttggctgc ggagctgtgg
61 ggcccggcgc ctcgggtcga cgtttccagg ctgccgcctc cgcccccgcg ccggcggcct
121 ggtccctgcc tccgggcctg cgcccggccc ggcccagctc cgctgctacg ctgggcgcct
181 ggcgggcctc tctgcggcgc tgctgcgcac cgacagcttc gtgggcggcc gctggctccc
241 ggccgccgcc accttccccg tgcaagaccc ggccagcggc gccgctctgg gcatggtagc
301 cgactgcggg gtgcgagagg cccgcgccgc cgtgcgcgct gcctacgagg ctttctgccg
361 ctggagggag gtctccgcca aggagaggag ttcattactt cggaagtggt acaatttaat
421 gatacaaaat aaggatgacc ttgccagaat aatcacagct gaaagtggaa agccactgaa
481 ggaggcacat ggagaaattc tctattccgc ctttttccta gagtggttct ctgaggaagc
541 ccgccgtgtt tacggagaca ttatccacac cccggcaaag gacaggcggg ccctggtcct
601 caagcagccc ataggcgtgg ctgcagtcat caccccgtgg aatttcccca gtgccatgat
661 cacccggaag gtgggggccg ccctggcagc cggctgtact gtcgtggtga agcctgccga
721 agacacgccc ttctccgccc tggccctggc tgagcttgca agccaggctg ggattccttc
781 aggtgtatac aatgttattc cctgttctcg aaagaatgcc aaggaagtag gggaggcaat
841 ttgtactgat cctctggtgt ccaaaatttc ctttactggt tcaacaacta caggaaagat
901 cctgttgcac cacgcagcaa actctgtgaa aagggtctct atggagctgg gcggccttgc
961 tccatttata gtatttgaca gtgccaacgt ggaccaggct gtagcagggg ccatggcatc
1021 taaatttagg aacactggac agacttgtgt ttgctcaaac caattcttgg tgcaaagggg
1081 catccatgat gcctttgtaa aagcattcgc cgaggccatg aagaagaacc tgcgcgtagg
1141 taatggattt gaggaaggaa ctactcaggg cccattaatt aatgaaaaag cggtagaaaa
1201 ggtggagaaa caggtgaatg atgccgtttc taaaggtgcc accgttgtga caggtggaaa
1261 acgacaccaa cttggaaaaa atttctttga gcctaccctg ctgtgcaatg tcacccagga
1321 catgctgtgc actcatgaag agactttcgg gcctctggca ccagttatca agttcgatac
1381 agaggaggag gctatagcaa tcgctaacgc agctgatgtt gggttagcag gttattttta
1441 ctctcaagac ccagcccaga tctggagagt ggcagagcag ctggaagtgg gcatggttgg
1501 cgtcaacgaa ggattaattt cctctgtgga gtgccctttt ggtggagtga agcagtccgg
1561 ccttgggcga gaggggtcca agtatggcat tgatgagtat ctggaactca agtatgtgtg
1621 ttacgggggc ttgtaggatt ctttggttct ttaaaaaaat ttaaaaggag acttatctac
1681 atatataggt acatgccatc cattatttta aataaactaa taggttttca gaattaaaaa
1741 aaaaaaaaa
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