LOCUS BC034293 1785 bp mRNA linear HUM 19-MAR-2009
DEFINITION Homo sapiens chromosome 9 open reading frame 68, mRNA (cDNA clone
MGC:34305 IMAGE:5167647), complete cds.
ACCESSION BC034293
VERSION BC034293.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1785)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1785)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-JUL-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 52 Row: p Column: 14
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 66772848
The stop codon of the CDS annotated on this record is located > 55
bases upstream of a splice junction, and therefore the mRNA is
predicted to be subject to nonsense-mediated mRNA decay (NMD).
FEATURES Location/Qualifiers
source 1..1785
/db_xref="H-InvDB:HIT000042091"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:34305 IMAGE:5167647"
/tissue_type="Brain, adult medulla"
/clone_lib="NIH_MGC_119"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1785
/gene="C9orf68"
/gene_synonym="bA6J24.2"
/gene_synonym="RP11-280I16.2"
/db_xref="GeneID:55064"
/db_xref="HGNC:HGNC:25472"
CDS 174..1352
/gene="C9orf68"
/gene_synonym="bA6J24.2"
/gene_synonym="RP11-280I16.2"
/codon_start=1
/product="C9orf68 protein"
/protein_id="AAH34293.1"
/db_xref="GeneID:55064"
/db_xref="HGNC:HGNC:25472"
/translation="MPLEVVVELQIRAISCPGVFLPGKQDVYLGVYLMNQYLETNSFP
SAFPIMIQESMRFEKVFESAVDPGAVVDLLEMWDELAYYEENTRDFLFPEPKLTPSHP
RRCREVLMKTALGFPGIAPKIEFSTRTAIRECVFLHRNRFLEERHESRRPLSTSHEPI
FPLNTIKMKLRENNLNRLPKGMQARAPSQYSTRHFFQDQPAQLNLGNNFKISGGSKPP
FVVRHVDSAKPFGENISEHHLRRSGRKSKFSDFPFPTRRASSLDSLAANVKVIKEPDE
RIVLRSDSSSCLDSSQFGKSSSSKQGDADFHGKASFATYQHSTSPGPLDQPLLRERFH
PGSQSTWKNIHERVCSLLTSHRAQLHQNKEDSTSEVNYIIERPSYPLKKYSLHEQRYF
"
BASE COUNT 539 a 392 c 412 g 442 t
ORIGIN
1 gtcccggtgg gagggacctg ggctgggggg gacggtaggg gaacaagggc gtgggactgg
61 ggaagcttct gggaacattt gctctaggta ttcagctaaa ctaagaaaaa ttggtccaag
121 gctcggcaca aaaggatctt ctcattccag tcctttcgcc cacgcaggga acgatgcctc
181 tggaggtggt ggtggagctg cagatccggg cgatttcttg cccaggagtg ttcctgcctg
241 gcaaacaaga tgtgtacctc ggggtctacc tcatgaatca gtacctggag accaacagct
301 ttccctctgc gttccccatt atgattcagg agagcatgag atttgaaaag gtatttgaaa
361 gtgcagtaga tcctggagct gtagtagacc ttttggaaat gtgggatgag ttggcctact
421 acgaagaaaa cacacgagat tttcttttcc cagagcccaa gctgacacct tcgcacccta
481 ggaggtgtag ggaggtgctc atgaagacgg ctctgggttt tccaggcatt gctcccaaaa
541 tagagttttc tacaaggaca gccatcagag aatgtgtgtt tctgcataga aacagatttc
601 ttgaagaaag acatgagtca cggaggcctt tatctacatc acatgaacca atatttccct
661 taaatactat aaagatgaaa ctaagggaga ataatctcaa cagactgccc aaaggcatgc
721 aagcccgggc gccctctcag tattctacca ggcatttctt ccaggaccag ccagctcagt
781 tgaaccttgg aaataatttc aaaatctctg gaggaagcaa gcctccattt gttgttagac
841 acgtggacag tgcaaagccc tttggtgaga atatttcaga gcatcatttg aggaggtctg
901 gaagaaaatc taagttttca gactttccgt ttccaacgag aagagcttct tctcttgaca
961 gccttgcagc taacgtaaag gttatcaaag agccagatga acggattgtt ttaaggagtg
1021 actcatcatc atgtttagat tcaagtcagt ttggaaagtc ttcatccagt aaacaagggg
1081 atgctgattt ccacgggaaa gcttcatttg ccacctacca gcattccacc tctcctggcc
1141 ccttggatca gccccttctc agagaaaggt tccatcctgg ttctcagtcc acatggaaga
1201 atatccatga gagggtatgc agtcttctga catcccacag agcacagctg caccaaaaca
1261 aggaagattc tacctctgaa gtaaattata tcattgaaag accaagctac cctctgaaga
1321 aatactcact gcatgaacag agatattttt aaggggaaat taatgaaagc ttaaggagaa
1381 tcatgaagag ctcactcact gagacaattg aagcatcctt aaagaaatga acactttttg
1441 ttgtctgtgt tgagtcactg atgtttaatc ccctttaaac caaaccctgt actcagtttt
1501 ttgtgcccag gaacggacac tcactgaaat tggaattttg aactgagata aacatcatac
1561 ttgttttatt gggatgactt ccaggaacag accgtaggca gtggcagagg gaagattctt
1621 gagcccctgc aaagcaaacc ctgcagctgg cctactgcct gagtataagc caagcacact
1681 tcccatggct cttctaagaa tcagggtatg ctttaataaa gggccttgta ccccctggac
1741 taaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaa
//