LOCUS BC034245 2147 bp mRNA linear HUM 03-OCT-2003
DEFINITION Homo sapiens cartilage acidic protein 1, mRNA (cDNA clone MGC:16989
IMAGE:4178363), complete cds.
ACCESSION BC034245
VERSION BC034245.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2147)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2147)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (02-JUL-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: David N. Louis, M.D.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 12 Row: h Column: 5
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 8922351.
FEATURES Location/Qualifiers
source 1..2147
/db_xref="H-InvDB:HIT000042080"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:16989 IMAGE:4178363"
/tissue_type="Brain, anaplastic oligodendroglioma with
1p/19q loss"
/clone_lib="NCI_CGAP_Brn67"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2147
/gene="CRTAC1"
/gene_synonym="ASPIC1"
/gene_synonym="CEP-68"
/gene_synonym="FLJ10320"
/db_xref="GeneID:55118"
/db_xref="MIM:606276"
CDS 249..1604
/gene="CRTAC1"
/gene_synonym="ASPIC1"
/gene_synonym="CEP-68"
/gene_synonym="FLJ10320"
/codon_start=1
/product="CRTAC1 protein"
/protein_id="AAH34245.1"
/db_xref="GeneID:55118"
/db_xref="MIM:606276"
/translation="MDPEASDLSRGILALRDVAAEAGVSKYTGGRGVSVGPILSSSAS
DIFCDNENGPNFLFHNRGDGTFVDAAASAGVDDPHQHGRGVALADFNRDGKVDIVYGN
WNGPHRLYLQMSTHGKVRFRDIASPKFSMPSPVRTVITADFDNDQELEIFFNNIAYRS
SSANRLFRVIRREHGDPLIEELNPGDALEPEGRGTGGVVTDFDGDGMLDLILSHGESM
AQPLSVFRGNQGFNNNWLRVVPRTRFGAFARGAKVVLYTKKSGAHLRIIDGGSGYLCE
MEPVAHFGLGKDEASSVEVTWPDGKMVSRNVASGEMNSVLEILYPRDEDTLQDPAPLE
CGQGFSQQENGHCMDTNECIQFPFVCPRDKPVCVNTYGSYRCRTNKKCSRGYEPNEDG
TACVGTLGQSPGPRPTTPTAAAATAAAAAAAGAATAAPVLVDGDLNLGSVVKESCEPS
C"
misc_feature 1293..1436
/gene="CRTAC1"
/gene_synonym="ASPIC1"
/gene_synonym="CEP-68"
/gene_synonym="FLJ10320"
/note="EGF_CA; Region: Calcium-binding EGF-like domain"
/db_xref="CDD:smart00179"
BASE COUNT 489 a 601 c 631 g 426 t
ORIGIN
1 aggagatcta cttcctcaac accaataatg ccttctcggg ggtggccacg tacaccgaca
61 agttgttcaa gttccgcaat aaccggtggg aagacatcct gagcgatgag gtcaacgtgg
121 cccgtggtgt ggccagcctc tttgccggac gctctgtggc ctgtgtggac agaaagggct
181 ctggacgcta ctctatctac attgccaatt acgcctacgg taatgtgggc cctgatgccc
241 tcattgaaat ggaccctgag gccagtgacc tctcccgggg cattctggcg ctcagagatg
301 tggctgctga ggctggggtc agcaaatata cagggggccg aggcgtcagc gtgggcccca
361 tcctcagcag cagtgcctcg gatatcttct gcgacaatga gaatgggcct aacttccttt
421 tccacaaccg gggcgatggc acctttgtgg acgctgcggc cagtgctggt gtggacgacc
481 cccaccagca tgggcgaggt gtcgccctgg ctgacttcaa ccgtgatggc aaagtggaca
541 tcgtctatgg caactggaat ggcccccacc gcctctatct gcaaatgagc acccatggga
601 aggtccgctt ccgggacatc gcctcaccca agttctccat gccctcccct gtccgcacgg
661 tcatcaccgc cgactttgac aatgaccagg agctggagat cttcttcaac aacattgcct
721 accgcagctc ctcagccaac cgcctcttcc gcgtcatccg tagagagcac ggagaccccc
781 tcatcgagga gctcaatccc ggcgacgcct tggagcctga gggccggggc acagggggtg
841 tggtgaccga cttcgacgga gacgggatgc tggacctcat cttgtcccat ggagagtcca
901 tggctcagcc gctgtccgtc ttccggggca atcagggctt caacaacaac tggctgcgag
961 tggtgccacg cacccggttt ggggcctttg ccaggggagc taaggtcgtg ctctacacca
1021 agaagagtgg ggcccacctg aggatcatcg acgggggctc aggctacctg tgtgagatgg
1081 agcccgtggc acactttggc ctggggaagg atgaagccag cagtgtggag gtgacgtggc
1141 cagatggcaa gatggtgagc cggaacgtgg ccagcgggga gatgaactca gtgctggaga
1201 tcctctaccc ccgggatgag gacacacttc aggacccagc cccactggag tgtggccaag
1261 gattctccca gcaggaaaat ggccattgca tggacaccaa tgaatgcatc cagttcccat
1321 tcgtgtgccc tcgagacaag cccgtatgtg tcaacaccta tggaagctac aggtgccgga
1381 ccaacaagaa gtgcagtcgg ggctacgagc ccaacgagga tggcacagcc tgcgtgggga
1441 ctctcggcca gtcaccgggc ccccgcccca ccacccccac cgctgctgct gccactgccg
1501 ctgctgctgc cgctgctgga gctgccactg ctgcaccggt cctcgtagat ggagatctca
1561 atctggggtc ggtggttaag gagagctgcg agcccagctg ctgagcaggg gtgggacatg
1621 aaccagcgga tggagtccag caggggagtg ggaaagtggg cttgtgctgc tgcctagaca
1681 gtagggatgt aaaggcctgg gagctagacc ctccccaagc ccatccatgc acattactta
1741 gctaacaatt agggagactc gtaaggccag gccctgtgct gggcacatag ctgtgatcac
1801 agcagacagg gtcgctgccc tgatggcgct tacattccag tgggtctaat gaccatatct
1861 taggacacag atgtgcccag ggaggtggtg tcactgcaca ggaagtatga ggactttagt
1921 gtcctgagtt caaatcctga ttcaggaact cacaaagcta tgtgacctta caccagtcac
1981 ttaacttgtt agccatccat tatcgcatct gcaaaatggg gattaagaat agaatcttgg
2041 ggttagtgtg gagattagat taaatgtatg taagacactt ggcacaaaac ctggcacata
2101 gtaaaggctc aataaaaaca agtgcctctc aaaaaaaaaa aaaaaaa
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