LOCUS BC034221 3025 bp mRNA linear HUM 16-JUN-2008
DEFINITION Homo sapiens ring finger protein 220, mRNA (cDNA clone MGC:39525
IMAGE:4814781), complete cds.
ACCESSION BC034221
VERSION BC034221.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3025)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3025)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-JUL-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 63 Row: a Column: 8
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 46397374.
FEATURES Location/Qualifiers
source 1..3025
/db_xref="H-InvDB:HIT000093357"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:39525 IMAGE:4814781"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..3025
/gene="RNF220"
/gene_synonym="RP4-678E16.1"
/db_xref="GeneID:55182"
/db_xref="HGNC:HGNC:25552"
CDS 361..2061
/gene="RNF220"
/gene_synonym="RP4-678E16.1"
/codon_start=1
/product="ring finger protein 220"
/protein_id="AAH34221.1"
/db_xref="GeneID:55182"
/db_xref="HGNC:HGNC:25552"
/translation="MDLHRAAFKMENSSYLPNPLASPALMVLASTAEASRDASIPCQQ
PRPFGVPVSVDKDVHIPFTNGSYTFASMYHRQGGVPGTFANRDFPPSLLHLHPQFAPP
NLDCTPISMLNHSGVGAFRPFASTEDRESYQSAFTPAKRLKNCHDTESPHLRFSDADG
KEYDFGTQLPSSSPGSLKVDDTGKKIFAVSGLISDREASSSPEDRNDRCKKKAAALFD
SQAPICPICQVLLRPSELQEHMEQELEQLAQLPSSKNSLLKDAMAPGTPKSLLLSASI
KREGESPTASPHSSATDDLHHSDRYQTFLRVRANRQTRLNARIGKMKRRKQDEGQREG
SCMAEDDAVDIEHENNNRFEEYEWCGQKRIRATTLLEGGFRGSGFIMCSGKENPDSDA
DLDVDGDDTLEYGKPQYTEADVIPCTGEEPGEAKEREALRGAVLNGGPPSTRITPEFS
KWASDEMPSTSNGESSKQEAMQKTCKNSDIEKITEDSAVTTFEALKARVRELERQLSR
GDRYKCLICMDSYSMPLTSIQCWHVHCEECWLRTLGAKKLCPQCNTITAPGDLRRIYL
"
BASE COUNT 689 a 894 c 785 g 657 t
ORIGIN
1 actgctcctt ctctcacgcc aactgagtct cttgatctgt acatgcaatc ccaggcagct
61 cgcgaacaca aacccggggc cagccgccta ctgctgctgc tgctgctgcc gctgccgccg
121 ccgccgccgc cgctgcctcc gccggctctg cgaacccggg acttttcatg caccacactc
181 tccgcctgct tccctccgtg tcctgaaaag tgcgaccgtt ctcccaagga atttccacgg
241 caagtcttag gagggaatga ttccccagta atattccctg ccctgaccca aagtgctggt
301 tggcctccct cccagggaag actgcttctt gcgtaacgcc ggccacagaa agagactccg
361 atggacttac accgggcagc cttcaagatg gagaactcat cctaccttcc caaccctctg
421 gcatccccag cactgatggt cctggcatcc acggctgagg ccagccgtga tgcttccatc
481 ccttgtcagc agccacgacc ctttggtgta cctgtctcag ttgacaagga cgtgcatatt
541 cctttcacca acggttccta tacctttgcc tctatgtacc atcggcaagg tggggtgcca
601 ggcacttttg ccaatcgtga tttcccccct tctctactac acctccaccc tcaatttgct
661 cccccaaatc tagattgcac cccaatcagt atgctgaatc atagtggtgt gggggctttc
721 cggccctttg cctccaccga ggaccgggag agctatcagt cagcctttac gccggccaag
781 cgacttaaga actgccatga cacagagtct ccccacttgc gcttctcaga tgcagatggc
841 aaggaatatg actttgggac acagctgcca tctagctccc ccggttcact aaaggttgat
901 gacactggga agaagatttt tgctgtctct ggcctcattt ctgatcggga agcctcatct
961 agcccagagg atcggaatga cagatgtaag aagaaagcag cggcattgtt cgacagccag
1021 gccccaattt gccccatctg ccaggtcctg ctgaggccca gtgagctgca ggagcatatg
1081 gagcaggaac tggagcagct agcccaactg ccctcgagca agaattccct tctgaaggat
1141 gccatggctc caggcacccc aaagtccctc ctgttgtctg cttccatcaa gagggaagga
1201 gagtctccaa cggcatcacc ccactcatct gccaccgatg acctccacca ttcagacaga
1261 taccagacct ttctgcgagt acgagccaac cggcagaccc gactgaatgc tcggattggg
1321 aaaatgaaac ggaggaagca agatgaaggg cagagggaag gctcctgcat ggctgaggat
1381 gatgctgtgg acatcgagca tgagaacaac aaccgctttg aggagtatga gtggtgtgga
1441 cagaagcgga tacgggccac cactctcctg gaaggtggct tccgaggctc tggcttcatc
1501 atgtgcagcg gcaaagagaa cccggacagt gatgctgact tggatgtgga tggggatgac
1561 actctggagt atgggaagcc acaatacaca gaggctgatg tcatcccctg cacaggcgag
1621 gagcctggtg aagccaagga gagagaggca cttcggggcg cagtcctaaa tggcggccct
1681 cccagcacgc gcatcacacc tgagttctct aaatgggcca gtgatgagat gccatccacc
1741 agcaatggtg aaagcagcaa gcaggaggcc atgcagaaga cctgcaagaa cagcgacatc
1801 gagaaaatca ccgaagattc agctgtgacc acgtttgagg ctctgaaggc tcgggtcaga
1861 gaacttgaac ggcagctatc tcgtggggac cgttacaaat gcctcatctg catggactcg
1921 tactcgatgc ccctaacgtc catccagtgt tggcacgtgc actgcgagga gtgctggctg
1981 cggaccctgg gtgccaagaa gctctgccct cagtgcaaca cgatcacagc gcccggagac
2041 ctgcggagga tctacttgtg agctatctgc cccaggcagg cctcgcctcc agcagcccca
2101 cctgccccca gcctctgtga cagtgaccgt ctccctttgt acatacttgc acacaggttc
2161 cccatgtaca tacatgcaca tactcaaaca tgcgtacaca cacacacatt tacacacgca
2221 ggactctgga gccagagtag aggctgtggc ccaggcacta cctgctggct cccacctatg
2281 gtttgggggc catacctgtt ccagctctgt tcccagggtg gggcagggag gtgggggttg
2341 ggggagtagt ggggcacggc tcgtaagatc cagcccccat actgacagac ggacagacag
2401 acatgcaaac accagactga agcacatgta atatagaccg tgtatgttta caatgttgtg
2461 tataaatggg acaactcctc gccctctacc tgtcccctcc ccctttggtt gtatgatttt
2521 cttctttttt aagaacccct ggaagcagcg cctccttcag ggttggctgg gagctcggcc
2581 catccacctc ttggggtacc tgcctctctc tctcctgtgg tgtcccttcc ctctcccatg
2641 tgctcggtgt tcagtggtgt atatttcttc tcccagacat ggggcacacg ccccaaggga
2701 catgatcctc tccttagtct tagctcatgg ggctctttat aaggagttgg ggggtagagg
2761 caggaaatgg gaaccgagct gaagcagagg ctgagttagg gggctagagg acagtgctcc
2821 tggccaccca gcctctgctg agaaccattc ctgggattag agctgccttt cccagggaaa
2881 aagtgtcgtc tccccgaccc tcccgtgggc cctgtggtgt gatgctgtgt ctgtatattc
2941 tatacaaagg tacttgtcct ttccctttgt aaactacatt tgacatggat taaaccagta
3001 taaacagttg aaaaaaaaaa aaaaa
//