LOCUS BC034046 5207 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens protein tyrosine phosphatase, receptor type, f
polypeptide (PTPRF), interacting protein (liprin), alpha 1, mRNA
(cDNA clone MGC:26800 IMAGE:4794300), complete cds.
ACCESSION BC034046
VERSION BC034046.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 5207)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 5207)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-JUL-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 32 Row: d Column: 19.
FEATURES Location/Qualifiers
source 1..5207
/db_xref="H-InvDB:HIT000042059"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:26800 IMAGE:4794300"
/tissue_type="Brain, hypothalamus"
/clone_lib="NIH_MGC_96"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..5207
/gene="PPFIA1"
/gene_synonym="LIP.1"
/gene_synonym="LIP1"
/gene_synonym="LIPRIN"
/gene_synonym="MGC26800"
/db_xref="GeneID:8500"
/db_xref="HGNC:HGNC:9245"
CDS 179..3787
/gene="PPFIA1"
/gene_synonym="LIP.1"
/gene_synonym="LIP1"
/gene_synonym="LIPRIN"
/gene_synonym="MGC26800"
/codon_start=1
/product="protein tyrosine phosphatase, receptor type, f
polypeptide (PTPRF), interacting protein (liprin), alpha
1"
/protein_id="AAH34046.1"
/db_xref="GeneID:8500"
/db_xref="HGNC:HGNC:9245"
/translation="MMCEVMPTISEAEGPPGGGGGHGSGSPSQPDADSHFEQLMVSML
EERDRLLDTLRETQETLALTQGKLHEVGHERDSLQRQLNTALPQEFAALTKELNVCRE
QLLEREEEIAELKAERNNTRLLLEHLECLVSRHERSLRMTVVKRQAQSPAGVSSEVEV
LKALKSLFEHHKALDEKVRERLRVALERCSLLEEELGATHKELMILKEQNNQKKTLTD
GVLDINHEQENTPSTSGKRSSDGSLSHEEDLAKVIELQEIISKQSREQSQMKERLASL
SSHVTELEEDLDTARKDLIKSEEMNTKLQRDVREAMAQKEDMEERITTLEKRYLAAQR
EATSVHDLNDKLENEIANKDSMHRQTEDKNRQLQERLELAEQKLQQTLRKAETLPEVE
AELAQRVAALSKAEERHGNIEERLRQMEAQLEEKNQELQRARQREKMNEEHNKRLSDT
VDKLLSESNERLQLHLKERMAALEDKNSLLREVESAKKQLEGTQHDKDQLVLNIEALR
AELDHMRLRGASLHHGRPHLGSVPDFRFPMADGHTDSYSTSAVLRRTQKGRLAALRDE
PSKVQTLNEQDWERAQQASVLANVAQAFESDADVSDGEDDRDTLLSSVDLLSPSGQAD
AHTLAMMLQEQLDAINKEIRLIQEEKENTEQRAEEIESRVGSGSLDNLGRFRSMSSIP
PYPASSLASSSPPGSGRSTPRRIPHSPAREVDRLGVMTLLPPSREEVRDDKTTIKCET
SPPSSPRALRLDRLHKGALHTVSHEDIRDIRNSTGSQDGPVSNPSSSNSSQDSLHKAP
KKKGIKSSIGRLFGKKEKGRPGQTGKEALGQAGVSETDNSSQDALGLSKLGGQAEKNR
KLQKKHELLGEARRQGLPFAQWDGPTVVVWLELWVGMPAWYVAACRANVKSGAIMSAL
SDTEIQREIGISNPLHRLKLRLAIQEIMSLTSPSAPPTSRTTLAYGDMNHEWIGNEWL
PSLGLPQYRSYFMECLVDARMLDHLTKKDLRGQLKMVDSFHRNSFQCGIMCLRRLNYD
RKELERKREESQSEIKDVLVWSNDRVIRWILSIGLKEYANNLIESGVHGALLALDETF
DFSALALLLQIPTQNTQARAVLEREFNNLLVMGTDRRFDEDDDKSFRRAPSWRKKFRP
KDIRGLAAGSAETLPANFRVTSSMSSPSMQPKKMQMDGNVSGTQRLDSATVRTYSC"
BASE COUNT 1530 a 1174 c 1287 g 1216 t
ORIGIN
1 cgtgtccggc cgcgggccgg ccttagtgac tggggcggcg ggcccggggc cacggcgtgg
61 ggcgggcagg cggacgccgg ccgcgggctg ctttcgtcgg ctcccaagct ctcccggagc
121 gagcagccgc ccgcgagccg ccgcggagcc tcctcgcccg ctcccgccgg cgagcaagat
181 gatgtgcgag gtgatgccga ccatcagcga agcagaaggc ccccctggag gaggtggagg
241 ccatggttcc ggctcccctt cacagccaga tgcagattca cattttgaac agttgatggt
301 ctccatgcta gaagaaaggg accgccttct tgatacactg agagagactc aagaaacgct
361 ggccttaacc caggggaagt tacacgaggt tggtcatgaa agagattcct tgcagagaca
421 gctcaacaca gcacttccac aggagttcgc agcacttact aaagaactca atgtatgcag
481 ggaacagctc cttgaaaggg aagaagaaat tgctgaactg aaagcagaaa ggaataacac
541 caggctgctg ttagagcatt tggaatgcct tgtctccagg catgagcggt ctcttaggat
601 gaccgtggtg aagagacaag cgcagtctcc agcaggcgtg tccagcgaag tggaagtgct
661 gaaagcactg aagtccttat ttgaacacca caaagctctg gatgaaaagg tgagagagcg
721 attacgagta gcacttgaaa gatgtagttt gttagaagag gaattaggtg ccacacacaa
781 agagctaatg attcttaaag aacagaataa tcagaaaaaa actctaacag atggagtgct
841 ggacataaac catgaacaag aaaatacacc aagcacgagt ggaaagagat cttctgatgg
901 ttctttaagc cacgaggaag accttgctaa agtaattgag ctccaagaaa tcataagtaa
961 gcagtcaagg gaacagagcc aaatgaaaga acgcctggct tccctttcca gtcatgtgac
1021 agaactggaa gaggatctgg acacggctag aaaagatctc atcaaatctg aagaaatgaa
1081 cacaaaattg caacgagatg tccgtgaagc catggcccaa aaggaagata tggaagagag
1141 aatcactact cttgaaaaac gctacctcgc tgcacagcgt gaagccacat ctgtgcatga
1201 cctcaatgat aaacttgaaa atgaaattgc aaataaagat tctatgcatc gacagactga
1261 agataaaaac cgccagttac aggagcgctt ggaattggca gagcaaaagc tgcaacagac
1321 actgaggaag gcagagacgc tcccggaggt ggaggcggag ctggcccaga gggtggcagc
1381 gctttccaag gctgaagaga gacacggcaa cattgaagaa aggttacgac agatggaagc
1441 acagttggag gagaagaatc aagaactgca gcgggcaagg caaagagaaa aaatgaacga
1501 agaacataat aaacgtttat cagacactgt tgacaagctg ctttcagaat ctaatgagag
1561 gcttcaactt catcttaaag agagaatggc tgctttggaa gataagaact ctcttttaag
1621 agaagttgaa agtgcaaaaa agcagttaga aggaacacaa cacgataagg atcagcttgt
1681 cctaaacatt gaagcactga gggctgaact agaccacatg agactaagag gtgcttcact
1741 tcatcatggc cgaccccact tgggcagtgt cccagatttc aggttcccca tggcagatgg
1801 ccacacagac tcctacagca ccagtgcagt gctgcggcgc acacagaaag gccggctggc
1861 agccctgcga gatgagcctt ccaaggtaca aactcttaat gagcaggatt gggaacgtgc
1921 ccagcaagct agtgtcttgg caaatgtagc acaagcattc gagagtgatg ctgacgtgtc
1981 tgatggtgaa gatgacaggg acactctcct cagctcagtt gacctgctat cgcccagcgg
2041 gcaggccgac gcgcacacac tagccatgat gcttcaggag cagctggacg ccatcaacaa
2101 agagatcagg ttgattcagg aagaaaaaga aaatacagag cagcgggcag aggagattga
2161 aagtcgagtt ggcagtggaa gtctagacaa tcttggtcgt tttagatcaa tgagctccat
2221 tcccccctac cctgcttcct cgcttgctag ctcctcccct ccgggcagtg ggcgctccac
2281 cccacgaagg atccctcaca gcccagctcg ggaagtggac agactgggcg tcatgaccct
2341 tttgccacct tccagagaag aggtacgaga tgacaagaca accataaagt gtgaaacctc
2401 cccgccttcc tccccgagag cccttcggtt agaccggctg cacaaagggg cgctgcacac
2461 cgttagccac gaggacatca gggacataag gaactccaca ggctcccagg atggtcccgt
2521 gagcaacccc agcagtagca acagtagcca ggactcgctc cacaaagccc caaagaagaa
2581 aggcattaag tcctccattg gccgcttgtt tggcaagaaa gaaaagggcc gacctggaca
2641 aactggcaaa gaagcattag gacaagctgg tgtttccgag acggataact catctcagga
2701 tgccttggga cttagcaaat tggggggaca ggctgaaaaa aatcgtaaac ttcaaaaaaa
2761 gcatgaattg ctgggggaag cccggagaca aggtttacct tttgcccaat gggacgggcc
2821 aacggttgtg gtctggctag agctctgggt tgggatgcca gcctggtatg tggctgcctg
2881 ccgagcaaac gtgaaaagcg gggccatcat gtcggccctg tccgacacag agatccagcg
2941 tgagattggc atcagcaacc ccctgcacag gctgaagctg aggctggcca tccaggagat
3001 catgtcgctg accagcccgt ctgccccgcc cacatctaga acgacactcg cctatgggga
3061 catgaaccac gagtggatcg gcaacgagtg gctccccagc ctgggcctcc cccagtaccg
3121 cagctacttc atggagtgcc ttgtagacgc caggatgctg gaccacttga ccaagaaaga
3181 ccttcgaggg cagctgaaaa tggtcgacag ttttcacaga aacagtttcc agtgtggaat
3241 tatgtgcctg agaaggttaa attatgaccg gaaagaactg gaaagaaaaa gagaagaaag
3301 tcagagtgaa ataaaagacg tgcttgtttg gagcaatgat cgagtgattc gctggatcct
3361 gtcaattggc cttaaagaat atgcaaacaa tcttatagag agtggtgttc acggagcact
3421 tctggcctta gatgaaacct tcgacttcag tgcactggca ctgctgttac agatcccaac
3481 gcagaacaca caggctcgtg ctgtcttgga aagagaattt aacaaccttt tggtcatggg
3541 gactgataga aggtttgatg aagatgatga taaaagcttt aggagagcac cttcatggag
3601 aaaaaagttt agaccaaagg acattcgtgg cttagctgct gggtcagcag agactctccc
3661 tgcaaacttc cgggtgactt cttctatgtc ttccccctct atgcagccaa agaagatgca
3721 gatggacggc aatgtatcag gaacacagag gttggattct gctacagtca ggacttactc
3781 ctgctaaagt ctcctgttgt ttacccacac tacttctaca gatgattatg cagcatttga
3841 atccaacaaa gactacattt tagaatccag tggaatcttt aatcttgtta atacttgtta
3901 tatggaccct aagatatttt attacagagt ttttaattag tgaaaaattc atgaatacca
3961 tagagaaaat attttagaat ttaatgtttc ttatatttat gtaaacttat gactcttcat
4021 ttatatagtt acttgctttt tcatgtatat ccaggctata aatatccttt caaatcatgt
4081 tcttatacct aattttagtc tttcaaatga atgtactgta atgcttgtat gtataaatcc
4141 tatgaataga gggcttttgt aaattatgca tttattgtaa ttatcattaa ttttttaatg
4201 ataaaccatg acaaaggatt ttacgtttat aaaattatga cagaagccat gtgcattatc
4261 ctttacggac gcagcctagc tctacagcaa tcatcctgaa ataagcatac ctaatttcaa
4321 gcaattgttg tattttcatg actgacctta actgtacttt ttctagcaag agatgcttta
4381 ttctgcagca tgaacagatt taaaatggct ggtgttaaat atcagctcct aataagatgt
4441 ggactgaaaa cactatcaca acactatgag aagcccctag cactggttaa cgctttccta
4501 gcctagtctc tggatttggg gagcttgtct tcagtggctg agactgtgag ctgggagcag
4561 ttctctcagc tggagagact cgggatgggg taacctgggg accagtctag cccctgcacc
4621 ctcttccctg cctctgctcc ttgggagcgg gtggagagac acccatgtgg ctccccttag
4681 ggccagcacc aagcaccacg ctctcatcct gcaagtcggc acacacagtg gatgaaggca
4741 ggagacccag aaagcagtgc agtgcagctc taataaaggc cttatttttc ttatgtaaat
4801 catcttttta catttgtttg taaacatgtt taaagaacga acctagtggg acatttttag
4861 actttgatgc tctagccatt ttggattgtg taagttgcag atgtggcttt tactttttaa
4921 atggcatatt aacaagccag caaagtgtgt cagaccatgg cgtggtattt attgtgcagc
4981 agatccagag acagaggcag cctgtctttt cagttggttt ctgcttttaa tttacttgta
5041 caattcattg ttactgttct gtttttctat taatcttttg tcaacttcct gattatgtaa
5101 caaagtatgt acagtctact tttgaactat ttttatcaca gtattattta ttgctttctt
5161 tcaataaagt actgaagcat tttcaactgc caaaaaaaaa aaaaaaa
//