LOCUS BC034040 4735 bp mRNA linear HUM 17-JUL-2006 DEFINITION Homo sapiens protein tyrosine phosphatase, receptor type, N polypeptide 2, mRNA (cDNA clone MGC:26506 IMAGE:4811578), complete cds. ACCESSION BC034040 VERSION BC034040.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 4735) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 4735) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (02-JUL-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Miklos Palkovits, M.D., Ph.D. cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki Toshiyuki and Piero Carninci (RIKEN) cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 32 Row: i Column: 20. FEATURES Location/Qualifiers source 1..4735 /db_xref="H-InvDB:HIT000042055" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:26506 IMAGE:4811578" /tissue_type="Brain, hippocampus" /clone_lib="NIH_MGC_95" /lab_host="DH10B" /note="Vector: pBluescriptR" gene 1..4735 /gene="PTPRN2" /gene_synonym="IA-2beta" /gene_synonym="IAR" /gene_synonym="ICAAR" /gene_synonym="PTPRP" /db_xref="GeneID:5799" /db_xref="HGNC:HGNC:9677" /db_xref="MIM:601698" CDS 105..3065 /gene="PTPRN2" /gene_synonym="IA-2beta" /gene_synonym="IAR" /gene_synonym="ICAAR" /gene_synonym="PTPRP" /codon_start=1 /product="protein tyrosine phosphatase, receptor type, N polypeptide 2" /protein_id="AAH34040.1" /db_xref="GeneID:5799" /db_xref="HGNC:HGNC:9677" /db_xref="MIM:601698" /translation="MGPPLPLLLLLLLLLPPRVLPAAPSSVPRGRQLPGRLGCLLEEG LCGASEACVNDGVFGRCQKVPAMDFYRYEVSPVALQRLRVALQKLSGTGFTWQDDYTQ YVMDQELADLPKTYLRRPEASSPARPSKHSVGSERRYSREGGAALANALRRHLPFLEA LSQAPASDVLARTHTAQDRPPAEGDDRFSESILTYVAHTSALTYPPGPRTQLREDLLP RTLGQLQPDELSPKVDSGVDRHHLMAALSAYAAQRPPAPPGEGSLEPQYLLRAPSRMP RPLLAPAAPQKWPSPLGDSEDPSSTGDGARIHTLLKDLQRQPAEVRGLSGLELDGMAE LMAGLMQGVDHGVARGSPGRAALGESGEQADGPKATLRGDSFPDDGVQDDDDRLYQEV HRLSATLGGLLQDHGSRLLPGALPFARPLDMERKKSEHPESSLSSEEETAGVENVKSQ TYSKDLLGQQPHSEPGAAAFGELQNQMPGPSKEEQSLPAGAQEALSDGLQLEVQPSEE EARGYIVTDREVLGPAVTFKVSANVQNVTTEDVEKATVDNKDKLEETSGLKILQTGVG SKSKLKFLPPQAEQEDSTKFIALTLVSLACILGVLLASGLIYCLRHSSQHRLKEKLSG LGGDPGADATAAYQELCRQRMATRPPDRPEGPHTSRISSVSSQFSDGPIPSPSARSSA SSWSEEPVQSNMDISTGHMILSYMEDHLKNKNRLEKEWEALCAYQAEPNSSFVAQREE NVPKNRSLAVLTYDHSRVLLKAENSHSHSDYINASPIMDHDPRNPAYIATQGPLPATV ADFWQMVWESGCVVIVMLTPLAENGVRQCYHYWPDEGSNLYHIYEVNLVSEHIWCEDF LVRSFYLKNLQTNETRTVTQFHFLSWYDRGVPSSSRSLLDFRRKVNKCYRGRSCPIIV HCSDGAGRSGTYVLIDMVLNKMAKGAKEIDIAATLEHLRDQRPGMVQTKEQFEFALTA VAEEVNAILKALPQ" BASE COUNT 1066 a 1411 c 1342 g 916 t ORIGIN 1 ggggggagga gccggcggcg cgcgcctccc tgggcccgga ctcggccgcc tcccgccgcc 61 tcccgcgcgg ccatggactg agcgccgccg gccaggccgc ggggatgggg ccgccgctcc 121 cgctgctgct gctgctactg ctgctgctgc cgccacgcgt cctgcctgcc gccccttcgt 181 ccgtcccccg cggccggcag ctcccggggc gtctgggctg cctgctcgag gagggcctct 241 gcggagcgtc cgaggcctgt gtgaacgatg gagtgtttgg aaggtgccag aaggttccgg 301 caatggactt ttaccgctac gaggtgtcgc ccgtggccct gcagcgcctg cgcgtggcgt 361 tgcagaagct ttccggcaca ggtttcacgt ggcaggatga ctatactcag tatgtgatgg 421 accaggaact tgcagacctc ccgaaaacct acctgaggcg tcctgaagca tccagcccag 481 ccaggccctc aaaacacagc gttggcagcg agaggaggta cagtcgggag ggcggtgctg 541 ccctggccaa cgccctccga cgccacctgc ccttcctgga ggccctgtcc caggccccag 601 cctcagacgt gctcgccagg acccatacgg cgcaggacag accccccgct gagggtgatg 661 accgcttctc cgagagcatc ctgacctatg tggcccacac gtctgcgctg acctaccctc 721 ccgggccccg gacccagctc cgcgaggacc tcctgccgcg gaccctcggc cagctccagc 781 cagatgagct cagccctaag gtggacagtg gtgtggacag acaccatctg atggcggccc 841 tcagtgccta tgctgcccag aggcccccag ctccccccgg ggagggcagc ctggagccac 901 agtaccttct gcgtgcaccc tcaagaatgc ccaggccttt gctggcacca gccgcccccc 961 agaagtggcc ttcacctctg ggagattccg aagacccctc tagcacaggc gatggagcac 1021 ggattcatac cctcctgaag gacctgcaga ggcagccggc tgaggtgagg ggcctgagtg 1081 gcctggagct ggacggcatg gctgagctga tggctggcct gatgcaaggc gtggaccatg 1141 gagtagctcg aggcagccct gggagagcgg ccctgggaga gtctggagaa caggcggatg 1201 gccccaaggc caccctccgt ggagacagct ttccagatga cggagtgcag gacgacgatg 1261 atagacttta ccaagaggtc catcgtctga gtgccacact cgggggcctc ctgcaggacc 1321 acgggtctcg actcttacct ggagccctcc cctttgcaag gcccctcgac atggagagga 1381 agaagtccga gcaccctgag tcttccctgt cttcagaaga ggagactgcc ggagtggaga 1441 acgtcaagag ccagacgtat tccaaagatc tgctggggca gcagccgcat tcggagcccg 1501 gggccgctgc gtttggggag ctccaaaacc agatgcctgg gccctcgaag gaggagcaga 1561 gccttccagc gggtgctcag gaggccctca gcgacggcct gcaattggag gtccagcctt 1621 ccgaggaaga ggcgcggggc tacatcgtga cagacagaga ggttctcgga ccagcagtga 1681 ccttcaaagt gagcgccaat gtccaaaacg tgaccactga ggatgtggag aaggccacag 1741 ttgacaacaa agacaaactg gaggaaacct ctggactgaa aattcttcaa accggagtcg 1801 ggtcgaaaag caaactcaag ttcctgcctc ctcaggcgga gcaagaagac tccaccaagt 1861 tcatcgcgct caccctggtc tccctcgcct gcatcctggg cgtcctcctg gcctctggcc 1921 tcatctactg cctccgccat agctctcagc acaggctgaa ggagaagctc tcgggactag 1981 ggggcgaccc aggtgcagat gccactgccg cctaccagga gctgtgccgc cagcgtatgg 2041 ccacgcggcc accagaccga cctgagggcc cgcacacgtc acgcatcagc agcgtctcat 2101 cccagttcag cgacgggccg atccccagcc cctccgcacg cagcagcgcc tcatcctggt 2161 ccgaggagcc tgtgcagtcc aacatggaca tctcaaccgg ccacatgatc ctgtcctaca 2221 tggaggacca cctgaagaac aagaaccggc tggagaagga gtgggaagcg ctgtgcgcct 2281 accaggcgga gcccaacagc tcgttcgtgg cccagaggga ggagaacgtg cccaagaacc 2341 gctccctggc tgtgctgacc tatgaccact cccgggtcct gctgaaggcg gagaacagcc 2401 acagccactc agactacatc aacgctagcc ctatcatgga tcacgacccg aggaaccccg 2461 cgtacatcgc cacccaggga ccgctgcccg ccaccgtggc tgacttttgg cagatggtgt 2521 gggagagcgg ctgcgtggtg atcgtcatgc tgacacccct cgcggagaac ggcgtccggc 2581 agtgctacca ctactggccg gatgaaggct ccaatctcta ccacatctat gaggtgaacc 2641 tggtctccga gcacatctgg tgtgaggact tcctggtgag gagcttctat ctgaagaacc 2701 tgcagaccaa cgagacgcgc accgtgacgc agttccactt cctgagttgg tatgaccgag 2761 gagtcccttc ctcctcaagg tccctcctgg acttccgcag aaaagtaaac aagtgctaca 2821 ggggccgttc ttgtccaata attgttcatt gcagtgacgg tgcaggccgg agcggcacct 2881 acgtcctgat cgacatggtt ctcaacaaga tggccaaagg tgctaaagag attgatatcg 2941 cagcgaccct ggagcacttg agggaccaga gacccggcat ggtccagacg aaggagcagt 3001 ttgagttcgc gctgacagcc gtggctgagg aggtgaacgc catcctcaag gcccttcccc 3061 agtgagcggc agcctcaggg gcctcagggg agcccccacc ccacggatgt tgtcaggaat 3121 catgatctga ctttaattgt gtgtcttcta ttataactgc atagtaatag ggcccttagc 3181 tctcccgtag tcagcgcagt ttagcagtta aaagtgtatt tttgtttaat caaacaataa 3241 taaagagaga tttgtggaaa aatccagtta cgggtggagg ggaatcggtt catcaatttt 3301 cacttgctta aaaaaaatac tttttcttaa agcacccgtt caccttcttg gttgaagttg 3361 tgttaacaat gcagtagcca gcacgttcga ggcggtttcc aggaagagtg tgcttgtcat 3421 ctgccacttt cgggagggtg gatccactgt gcaggagtgg ccggggaagc tggcagcact 3481 cagtgaggcc gcccggcaca caaggcacgt ttggcatttc tctttgagag agtttatcat 3541 tgggagaagc cgcggggaca gaactgaacg tcctgcagct tcggggcaag tgagacaatc 3601 acagctcctc gctgcgtctc catcaacact gcgccgggta ccatggacgg ccccgtcagc 3661 cacacctgtc agcccaagca gagtgattca ggggctcccc gggggcagac acctgtgcac 3721 cccatgagta gtgcccactt gaggctggca ctcccctgac ctcacctttg caaagttaca 3781 gatgcacccc aacattgaga tgtgttttta atgttaaaat attgatttct acgttatgaa 3841 aacagatgcc cccgtgaatg cttacctgtg agataaccac aaccaggaag aacaaatctg 3901 ggcattgagc aagctatgag ggtccccggg agcacacgaa ccctgccagg cccccgctgg 3961 ctcctccagg cacgtcccgg acctgtgggg ccccagagag gggacatttc cctcctggga 4021 gagaaggaga tcagggcaac tcggagaggg ctgcgagcat ttccctcccg ggagagatca 4081 gggcgacctg cacgcactgc gtagagcctg gaagggaagt gagaaaccag ccgaccggcc 4141 ctgcccctct tcccgggatc acttaatgaa ccacgtgttt tgacatcatg taaacctaag 4201 cacgtagaga tgattcggat ttgacaaaat aacatttgag tatccgattc gccatcaccc 4261 cctaccccag aaataggaca attcacttca ttgaccagga tgatcacatg gaaggcggcg 4321 cagaggcagc tgtgtgggct gcagatttcc tgtgtggggt tcagcgtaga aaacgcacct 4381 ccatcccgcc cttcccacag cattcctcca tcttagatag atggtactct caaaggccct 4441 accagaggga acacggccta ctgagcggac agaatgatgc caaaatattg cttatgtctc 4501 tacatggtat tgtaatgaat atctgcttta atatagctat catttctttt ccaaaattac 4561 ttctctctat ctggaattta attaatcgaa atgaatttat ctgaatatag gaagcatatg 4621 cctacttgta atttctaact ccttatgttt gaagagaaac ctccggtgtg agatatacaa 4681 atatatttaa ttgtgtcata ttaaacttct gatttcacaa aaaaaaaaaa aaaaa //