LOCUS BC033925 2899 bp mRNA linear HUM 06-OCT-2003 DEFINITION Homo sapiens SHC (Src homology 2 domain containing) transforming protein 1, mRNA (cDNA clone MGC:39145 IMAGE:4896385), complete cds. ACCESSION BC033925 VERSION BC033925.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2899) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2899) AUTHORS Strausberg,R. TITLE Direct Submission JOURNAL Submitted (02-JUL-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Cancer Genomics Office, National Cancer Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Steven Jones, Jennifer Asano, Ian Bosdet, Yaron Butterfield, Susanna Chan, Readman Chiu, Chris Fjell, Erin Garland, Ran Guin, Letticia Hsiao, Martin Krzywinski, Reta Kutsche, Oliver Lee, Soo Sen Lee, Victor Ling, Carrie Mathewson, Candice McLeavy, Steven Ness, Pawan Pandoh, Anna-Liisa Prabhu, Parvaneh Saeedi, Jacqueline Schein, Duane Smailus, Michael Smith, Lorraine Spence, Jeff Stott, Michael Thorne, Miranada Tsai, Natasja van den Bosch, Jill Vardy, George Yang, Scott Zuyderduyn, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 42 Row: j Column: 8 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 10835030. FEATURES Location/Qualifiers source 1..2899 /db_xref="H-InvDB:HIT000042029" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:39145 IMAGE:4896385" /tissue_type="Brain, neuroblastoma" /clone_lib="NIH_MGC_19" /lab_host="DH10B-R" /note="Vector: pOTB7" gene 1..2899 /gene="SHC1" /gene_synonym="SHC" /gene_synonym="SHCA" /db_xref="GeneID:6464" /db_xref="MIM:600560" CDS 266..1375 /gene="SHC1" /gene_synonym="SHC" /gene_synonym="SHCA" /codon_start=1 /product="SHC1 protein" /protein_id="AAH33925.1" /db_xref="GeneID:6464" /db_xref="MIM:600560" /translation="MSLCHRWRSNLKFAGMPITLTVSTSSLNLMAADCKQIIANHHMQ SISFASGGDPDTAEYVAYVAKDPVNQRACHILECPEGLAQDVISTIGQAFELRFKQYL RNPPKLVTPHDRMAGFDGSAWDEEEEEPPDHQYYNDFPGKEPPLGGVVDMRLREGAAP GAARPTAPNAQTPSHLGATLPVGQPVGGDPEVRKQMPPPPPCPGRELFDDPSYVNVQN LDKARQAVGGAGPPNPAINGSAPRDLFDMKPFEDALRVPPPPQSVSMAEQLRGEPWFH GKLSRREAEALLQLNGDFLVRESTTTPGQYVLTGLQSGQPKHLLLVDPEGVVRTKDHR FESVSHLISYHMDNHLPIISAGSELCLQQPVERKL" misc_feature 278..574 /gene="SHC1" /gene_synonym="SHC" /gene_synonym="SHCA" /note="PID; Region: Phosphotyrosine interaction domain (PTB/PID)" /db_xref="CDD:pfam00640" misc_feature 1085..1300 /gene="SHC1" /gene_synonym="SHC" /gene_synonym="SHCA" /note="SH2; Region: SH2 domain" /db_xref="CDD:pfam00017" BASE COUNT 640 a 839 c 738 g 682 t ORIGIN 1 gagagaagag gctccacgtt gggcggggat ggggcctgaa actgtctggg tctgagctgg 61 ggagcggaag ccacttgtcc ctctccctcc ccaggacttc tgtgactcct gggccacaga 121 ggtccaacca ggctaagggc ctggggatac cccctgcctg gcccccttgc ccaaactggc 181 aggggggcca ggctgggcag cagcccctct ttcacctcaa ctatggatct cctgcccccc 241 aagcccaagt acaatccact ccggaatgag tctctgtcat cgctggagga gtaacctgaa 301 atttgctgga atgccaatca ctctcaccgt ctccaccagc agcctcaacc tcatggccgc 361 agactgcaaa cagatcatcg ccaaccacca catgcaatct atctcatttg catccggcgg 421 ggatccggac acagccgagt atgtcgccta tgttgccaaa gaccctgtga atcagagagc 481 ctgccacatt ctggagtgtc ccgaagggct tgcccaggat gtcatcagca ccattggcca 541 ggccttcgag ttgcgcttca aacaatacct caggaaccca cccaaactgg tcacccctca 601 tgacaggatg gctggctttg atggctcagc atgggatgag gaggaggaag agccacctga 661 ccatcagtac tataatgact tcccggggaa ggaacccccc ttgggggggg tggtagacat 721 gaggcttcgg gaaggagccg ctccaggggc tgctcgaccc actgcaccca atgcccagac 781 ccccagccac ttgggagcta cattgcctgt aggacagcct gttgggggag atccagaagt 841 ccgcaaacag atgccacctc caccaccctg tccaggcaga gagctttttg atgatccctc 901 ctatgtcaac gtccagaacc tagacaaggc ccggcaagca gtgggtggtg ctgggccccc 961 caatcctgct atcaatggca gtgcaccccg ggacctgttt gacatgaagc ccttcgaaga 1021 tgctcttcgc gtgcctccac ctccccagtc ggtgtccatg gctgagcagc tccgagggga 1081 gccctggttc catgggaagc tgagccggcg ggaggctgag gcactgctgc agctcaatgg 1141 ggacttcctg gtacgggaga gcacgaccac acctggccag tatgtgctca ctggcttgca 1201 gagtgggcag cctaagcatt tgctactggt ggaccctgag ggtgtggttc ggactaagga 1261 tcaccgcttt gaaagtgtca gtcaccttat cagctaccac atggacaatc acttgcccat 1321 catctctgcg ggcagcgaac tgtgtctaca gcaacctgtg gagcggaaac tgtgatctgc 1381 cctagcgctc tcttccagaa gatgccctcc aatcctttcc accctattcc ctaactctcg 1441 ggacctcgtt tgggagtgtt ctgtgggctt ggccttgtgt cagagctggg agtagcatgg 1501 actctgggtt tcatatccag ctgagtgaga gggtttgagt caaaagcctg ggtgagaatc 1561 ctgcctctcc ccaaacatta atcaccaaag tattaatgta cagagtggcc cctcacctgg 1621 gcctttcctg tgccaacctg atgccccttc cccaagaagg tgagtgcttg tcatggaaaa 1681 tgtcctgtgg tgacaggccc agtggaacag tcacccttct gggcaagggg gaacaaatca 1741 cacctctggg cttcagggta tcccagaccc ctctcaacac ccgccccccc catgtttaaa 1801 ctttgtgcct ttgaccatct cttaggtcta atgatatttt atgcaaacag ttcttggacc 1861 cctgaattca atgacaggga tgccaacacc ttcttggctt ctgggacctg tgttcttgct 1921 gagcaccctc tccggtttgg gttgggataa cagaggcagg agtggcagct gtcccctctc 1981 cctggggata tgcaaccctt agagattgcc ccagagcccc actcccggcc aggcgggaga 2041 tggacccctc ccttgctcag tgcctcctgg ccggggcccc tcaccccaag gggtctgtat 2101 atacatttca taaggcctgc cctcccatgt tgcatgccta tgtactctac gccaaagtgc 2161 agcccttcct cctgaagcct ctgccctgcc tccctttctg ggagggcggg gtgggggtga 2221 ctgaatttgg gcctcttgta cagttaactc tcccaggtgg attttgtgga ggtgagaaaa 2281 ggggcattga gactataaag cagtagacaa tccccacata ccatctgtag agttggaact 2341 gcattctttt aaagttttat atgcatatat tttagggctg tagacttact ttcctatttt 2401 cttttccatt gcttattctt gagcacaaaa tgataatcaa ttattacatt tatacatcac 2461 ctttttgact tttccaagcc cttttacagc tcttggcatt ttcctcgcct aggcctgtga 2521 ggtaactggg atcgcacctt ttataccaga gacctgaggc agatgaaatt tatttccatc 2581 taggactaga aaaacttggg tctcttaccg cgagactgag aggcagaagt cagcccgaat 2641 gcctgtcagt ttcatggagg ggaaacgcaa aacctgcagt tcctgagtac cttctacagg 2701 cccggcccag cctaggcccg gggtggccac accacagcaa gccggccccc cctcttttgg 2761 ccttgtggat aagggagagt tgaccgtttt catcctggcc tccttttgct gtttggatgt 2821 ttccacgggt ctcacttata ccaaagggaa aactcttcat taaagtccgt atttcttcta 2881 aaaaaaaaaa aaaaaaaaa //