LOCUS BC033810 2320 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens TNF receptor-associated factor 2, mRNA (cDNA clone
MGC:45012 IMAGE:5182942), complete cds.
ACCESSION BC033810
VERSION BC033810.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2320)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2320)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-JUL-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 68 Row: l Column: 19
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 42544228.
FEATURES Location/Qualifiers
source 1..2320
/db_xref="H-InvDB:HIT000041970"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:45012 IMAGE:5182942"
/tissue_type="Colon, Kidney, Stomach, adult, whole pooled"
/clone_lib="NIH_MGC_116"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2320
/gene="TRAF2"
/gene_synonym="MGC:45012"
/gene_synonym="TRAP"
/gene_synonym="TRAP3"
/db_xref="GeneID:7186"
/db_xref="HGNC:HGNC:12032"
/db_xref="MIM:601895"
CDS 46..1551
/gene="TRAF2"
/gene_synonym="MGC:45012"
/gene_synonym="TRAP"
/gene_synonym="TRAP3"
/codon_start=1
/product="TNF receptor-associated factor 2"
/protein_id="AAH33810.1"
/db_xref="GeneID:7186"
/db_xref="HGNC:HGNC:12032"
/db_xref="MIM:601895"
/translation="MAAASVTPPGSLELLQPGFSKTLLGTKLEAKYLCSACRNVLRRP
FQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVES
LPAVCPSDGCTWKGTLKEYESCHEGRCPLMLTECPACKGLVRLGEKERHLEHECPERS
LSCRHCRAPCCGADVKAHHEVCPKFPLTCDGCGKKKIPREKFQDHVKTCGKCRVPCRF
HAIGCLETVEGEKQQEHEVQWLREHLAMLLSSVLEAKPLLGDQSHAGSELLQRCESLE
KKTATFENIVCVLNREVERVAMTAEACSRQHRLDQDKIEALSSKVQQLERSIGLKDLA
MADLEQKVLEMEASTYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCL
RIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPD
VTSSSFQRPVNDMNIASGCPLFCPVSKMEAKNSYVRDDAIFIKAIVDLTGL"
BASE COUNT 519 a 655 c 728 g 418 t
ORIGIN
1 cgcgctgcga ccgttggggc tttgttcgcg ggggtcacag ctctcatggc tgcagctagc
61 gtgacccccc ctggctccct ggagttgcta cagcccggct tctccaagac cctcctgggg
121 accaagctgg aagccaagta cctgtgctcc gcctgcagaa acgtcctccg caggcccttc
181 caggcgcagt gtggccaccg gtactgctcc ttctgcctgg ccagcatcct cagctctggg
241 cctcagaact gtgctgcctg tgttcacgag ggcatatatg aagaaggcat ttctatttta
301 gaaagcagtt cggccttccc agataatgct gcccgcaggg aggtggagag cctgccggcc
361 gtctgtccca gtgatggatg cacctggaag gggaccctga aagaatacga gagctgccac
421 gaaggccgct gcccgctcat gctgaccgaa tgtcccgcgt gcaaaggcct ggtccgcctt
481 ggtgaaaagg agcgccacct ggagcacgag tgcccggaga gaagcctgag ctgccggcat
541 tgccgggcac cctgctgcgg agcagacgtg aaggcgcacc acgaggtctg ccccaagttc
601 cccttaactt gtgacggctg cggcaagaag aagatccccc gggagaagtt tcaggaccac
661 gtcaagactt gtggcaagtg tcgagtccct tgcagattcc acgccatcgg ctgcctcgag
721 acggtagagg gtgagaaaca gcaggagcac gaggtgcagt ggctgcggga gcacctggcc
781 atgctactga gctcggtgct ggaggcaaag cccctcttgg gagaccagag ccacgcgggg
841 tcagagctcc tgcagaggtg cgagagcctg gagaagaaga cggccacttt tgagaacatt
901 gtctgcgtcc tgaaccggga ggtggagagg gtggccatga ctgccgaggc ctgcagccgg
961 cagcaccggc tggaccaaga caagattgaa gccctgagta gcaaggtgca gcagctggag
1021 aggagcattg gcctcaagga cctggcgatg gctgacttgg agcagaaggt cttggagatg
1081 gaggcatcca cctacgatgg ggtcttcatc tggaagatct cagacttcgc caggaagcgc
1141 caggaagctg tggctggccg catacccgcc atcttctccc cagccttcta caccagcagg
1201 tacggctaca agatgtgtct gcgtatctac ctgaacggcg acggcaccgg gcgaggaaca
1261 cacctgtccc tcttctttgt ggtgatgaag ggcccgaatg acgccctgct gcggtggccc
1321 ttcaaccaga aggtgacctt aatgctgctc gaccagaata accgggagca cgtgattgac
1381 gccttcaggc ccgacgtgac ttcatcctct tttcagaggc cagtcaacga catgaacatc
1441 gcaagcggct gccccctctt ctgccccgtc tccaagatgg aggcaaagaa ttcctacgtg
1501 cgggacgatg ccatcttcat caaggccatt gtggacctga cagggctcta actgccccct
1561 actggtgtct gggggttggg ggcagccagg cacagccggc tcacggaggg gccaccacac
1621 tgggccaggg tctcactgta caagtgggca ggggccgcgc ttgggcgctt gggagggtgt
1681 cggcctgcag ccaagttcac tgtcacgggg gaaggagcca ccagccagtc ctcagatttc
1741 agagactgcg gaggggcttg gcagacggtc ttagccaagg gctgtggtgg cattggccga
1801 gggtcttcgg gtgcttccca gcacaagctg cccttgctgt cctgtgcagt gaagggagag
1861 gccctgggtg ggggacactc agagtgggag cacatcccag cagtgcccat gtagcaggag
1921 cacagtggat ggccttgtgt ccctcgggca tgacaggcag aaacgagggc tgctccagga
1981 gaagggcctc ctgctggcca gagcaaggaa ggctgagcag cttggttctc ccctctggcc
2041 cctggagaga agggggagca ttcctagacc cctgggtgct tgtctgcaca gagctctggt
2101 ctgtgccacc ttggccaggc tggctgtggg agggtctggt cccacgccgc ctctgctcag
2161 accactgtgt gggaggtgca cagcacagcc tgcgggtaaa gtgtgagagc ttgccatcca
2221 gctcacgaag acagagttat taaaccattc aaatctcaaa aaaaaaaaaa aaaaaaaaaa
2281 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
//