LOCUS BC033743 2410 bp mRNA linear HUM 04-AUG-2008 DEFINITION Homo sapiens synuclein, alpha interacting protein, mRNA (cDNA clone MGC:45239 IMAGE:5193089), complete cds. ACCESSION BC033743 VERSION BC033743.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2410) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2410) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (02-JUL-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Life Technologies, Inc. cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 68 Row: m Column: 8 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 4885602. FEATURES Location/Qualifiers source 1..2410 /db_xref="H-InvDB:HIT000093209" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:45239 IMAGE:5193089" /tissue_type="Brain, adult, 6 pooled whole brains" /clone_lib="NIH_MGC_114" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..2410 /gene="SNCAIP" /gene_synonym="SYPH1" /db_xref="GeneID:9627" /db_xref="HGNC:HGNC:11139" /db_xref="MIM:603779" CDS 129..1790 /gene="SNCAIP" /gene_synonym="SYPH1" /codon_start=1 /product="SNCAIP protein" /protein_id="AAH33743.1" /db_xref="GeneID:9627" /db_xref="HGNC:HGNC:11139" /db_xref="MIM:603779" /translation="MTYLIQSHHSRRSQNCAEDVIRKTKTDQNGQLECVRWMVSETEA IAELSCSKDFPSLIHYAGCYGQEKILLWLLQFMQEQGISLDEVDQDGNSAVHVASQHG YLGCIQTLVEYGANVTMQNHAGEKPSQSAERQGHTLCSRYLVVVETCMSLASQVVKLT KQLKEQTVERVTLQNQLQQFLEAQKSEGKSLPSSPSSPSSPASRKSQWKSPDADDDSV AKSKPGVQEGIQVLGSLSASSRARPKAKDEDSDKILRQLLGKEISENVCTQEKLSLEF QDAQASSRNSKKIPLEKRELKLARLRQLMQRSLSESDTDSNNSEDPKTTPVRKADRPR PQPIVESVESMDSAESLHLMIKKHTLASGGRRFPFSIKASKSLDGHSPSPTSESSEPD LESQYPGSGSIPPNQPSGDPQQPSPDSTAAQKVATSPKSALKPPSSKRRTSQNLKLRV TFEEPVVQMEQPSLELNGEKDKDKGRTLQRTSTSNESGDQLKRPFGAFRSIMETLSGN QNNNNNYQAANQLKTSTLPLTSLGRKTDAKGNPASSASKGKNKAA" BASE COUNT 775 a 559 c 540 g 536 t ORIGIN 1 cgcgctcctg agccgccggc gcgccgggcg ccccgggaat ttataagtat ttgaccgtac 61 tcaaaatgtg caaggaagaa taatggaagc ccctgaatac cttgatttgg atgaaattga 121 ctttagtgat gacatatctt attcagtcac atcactcaag acgatcccag aactgtgccg 181 aagatgtgat acgcaaaacg aagacagatc agaatggtca gttggagtgc gtacgctgga 241 tggtgagcga aacagaagcc attgcagaac tgagttgttc taaggatttt ccaagcctta 301 ttcattacgc aggttgctat ggccaggaaa agattcttct gtggcttctt cagtttatgc 361 aagaacaggg catctcgttg gatgaagtag accaggatgg caacagtgcc gttcacgtag 421 cctcacagca tggctacctt ggatgcatac agaccttggt tgaatatgga gcaaatgtca 481 ccatgcagaa ccacgctggg gaaaagccct cccagagcgc cgagcggcag gggcacaccc 541 tgtgctccag gtacctggtg gtggtggaga cctgcatgtc gctggcctct caagtggtga 601 agttaaccaa gcagctaaag gaacaaacag tagaacgtgt cacgctgcag aaccaactcc 661 aacaatttct agaagcccag aaatcagagg gcaagtcact cccttcttca cccagttcac 721 catcctcacc tgcctccaga aagtcccagt ggaaatctcc agatgcagat gatgattctg 781 tagccaaaag caagccagga gtccaagagg ggattcaggt tcttggaagc ctgtcagcct 841 ccagccgggc tagacccaaa gcaaaagatg aagattctga taaaatctta cgccagttat 901 tgggaaagga aatctcagaa aatgtctgca cccaggaaaa actgtccttg gaattccagg 961 atgctcaggc ttcctctaga aattctaaaa agatcccact ggagaagagg gaactgaagt 1021 tagccaggct gagacagctg atgcagaggt cactgagtga gtctgacaca gactccaaca 1081 actctgagga ccccaagact accccagtga ggaaggctga ccgaccaagg ccgcagccca 1141 ttgtagaaag cgtagagagt atggacagcg cagaaagcct gcacctgatg attaagaaac 1201 acaccttggc atcaggggga cgcaggtttc ctttcagcat caaggcctcc aaatccctgg 1261 atggccacag cccatctccc acctcagaga gcagcgaacc agacttagaa tcccagtatc 1321 caggctcagg gagtattcct ccaaaccagc cctctggtga ccctcagcag cccagccctg 1381 acagtactgc tgcccagaaa gttgccacaa gtcccaagag tgccctcaag cctccatctt 1441 ccaagcgtag gacatctcag aacttaaaac tgagagttac ctttgaggag cctgtggtgc 1501 agatggagca gcctagcctt gaactgaatg gagaaaaaga caaagataag ggcaggactc 1561 tccagcggac ctccacaagt aacgaatcgg gggatcaact gaaaaggcct tttggagcct 1621 ttcgatctat catggagaca ctaagtggca accaaaacaa taataataac taccaggcag 1681 ccaaccagct gaaaacctct acattgccct tgacctcact tgggaggaag acagatgcca 1741 agggaaaccc tgccagctcc gctagcaaag gaaagaataa ggcagcataa tgacatcaat 1801 agaaaaatga agaaatccta cagcataaag cacattgctg agccagagtc aaaagaactc 1861 ttcttgtaaa tcacttttta aattttctct cactgatgcc ctttggaaat tattggaaat 1921 ttctggacta tcctctttgg aaagagaacc atgaaaacaa tgcctcacca gcagaagaac 1981 agaatatcag gatgccttaa atttatagta gtagactgta aaagattcat tttggggtga 2041 tatctgtata tataacttgt ttttttaaaa gatgccgttt aaaagcatga ttgggaaaat 2101 gtatgttttt taagagtaga ttgattcacc ctacccacag gacattcacc aagccactga 2161 taccatttta tatttcatca attgcatgag tatttgctaa tgttgattga acctcccttt 2221 ccccataatg tgggcagatt tggctcagct ccttcatgag atcaggtcag tggtattgtt 2281 tctgtcaaga gtgttttttc tgtcatttct actttttgta taaaggaaat aaaacaatgt 2341 taacagccaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa 2401 aaaaaaaaaa //