LOCUS BC033737 3289 bp mRNA linear HUM 09-JUN-2008
DEFINITION Homo sapiens oligodendrocytic myelin paranodal and inner loop
protein, mRNA (cDNA clone MGC:44844 IMAGE:5177902), complete cds.
ACCESSION BC033737
VERSION BC033737.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3289)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3289)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-JUL-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 68 Row: k Column: 10
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 16945967.
FEATURES Location/Qualifiers
source 1..3289
/db_xref="H-InvDB:HIT000041930"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:44844 IMAGE:5177902"
/tissue_type="Brain, Lung, Testis, adult, pooled whole"
/clone_lib="NIH_MGC_115"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..3289
/gene="OPALIN"
/gene_synonym="HTMP10"
/gene_synonym="TMP10"
/db_xref="GeneID:93377"
/db_xref="HGNC:HGNC:20707"
CDS 87..512
/gene="OPALIN"
/gene_synonym="HTMP10"
/gene_synonym="TMP10"
/codon_start=1
/product="oligodendrocytic myelin paranodal and inner loop
protein"
/protein_id="AAH33737.1"
/db_xref="GeneID:93377"
/db_xref="HGNC:HGNC:20707"
/translation="MSFSLNFTLPANTTSSPVTGGKETDCGPSLGLAAGIPLLVATAL
LVALLFTLIHRRRSSIEAMEESDRPCEISEIDDNPKISENPRRSPTHEKNTMGAQEAH
IYVKTVAGSEEPVHDRYRPTIEMERRRGLWWLVPRLSLE"
BASE COUNT 939 a 702 c 713 g 935 t
ORIGIN
1 aatgaaagac acaagccaat aaagccagtg agaaaggagc ttaccaaagg cagtgtacga
61 agaaggttcc tgggagactg tcagaaatga gtttttcact gaacttcacc ctgccggcga
121 acacaacgtc ctctcctgtc acaggtggga aagaaacgga ctgtgggccc tctcttggat
181 tagcggcggg cataccattg ctggtggcca cagccctgct ggtggcttta ctatttactt
241 tgattcaccg aagaagaagc agcattgagg ccatggagga aagtgacaga ccatgtgaaa
301 tttcagaaat tgatgacaat cccaagatat ctgagaatcc taggagatca cccacacatg
361 agaagaatac gatgggagca caagaggccc acatatatgt gaagactgta gcaggaagcg
421 aggaacctgt gcatgaccgt taccgtccta ctatagaaat ggaaagaagg aggggattgt
481 ggtggcttgt gcccagactg agcctggaat gatgcagctc agtcaaggag cagcagacct
541 ggcactggaa cagggttgaa aacccagggt tttgtacttg gagaggaaag atgccaagct
601 gcttcttaat caatccaaat ttcatttaca gctctggaac actttggggc tgatttgtct
661 ctttagggga catccccaac atggttaatt ccaactctca gatcttgtgc tttagttagt
721 acatgtgact caccagatgg ggtccttaga tcctattcct gctcccagtg ggaatttgct
781 tttctttgtc attttgggaa aggggcttgg tttctgagtg tcttgccttc tcatcttttt
841 ttttcatatc ctttttctca aaaaagccat cagatctgac tttcatggaa gtgttgctga
901 ggtcagcctg gtgcaagttg ggatacaaat gaaacttatg caggatgtgt gagaggaagc
961 agttaattgt ttctgaatat ctcagggtag gaaccatgtg gagccacaca ttccctgacc
1021 acagggaagc acctggctca atcatgtcac acagcagtgg aaagaatacg gactcttaag
1081 tcacacctac cactgagcag ctgtacgact ttggagaagt tgtttaacat tttcaagcct
1141 cagtttttgc ttttttaaag gaggggaaat atttgcctca tgtcataatt gaaaagatta
1201 aataagaaat aaagggaagt gtctgctact tagttgccag tcaaaatgtt agttctctct
1261 ctctaccacc ttcttcctac ctcttcccat attgcttgcc tgataaaaca gctaatcacc
1321 agcatttgtt ccccatagtc acagggccac acaagggaac atttaggaca aactttctcc
1381 atggcctatg atccaaattg ttatctaaag atgattctag gtgttgctgg tagtatgtga
1441 atcttccaat ctaggtgtga tcgtgtcctc atatgaatca ggaaaaggca gtttcttaca
1501 agttccgaat tccaaataca gagactggtg gtgttacatt taaccttaaa gatgttaatg
1561 ttgatggaaa ttcatgtttc atattaaaac aacactttgt ctttacaatg aaacattttg
1621 cttaattttt aaagtaagac attatgatac ctctgatggc agttcctcaa ataactttaa
1681 cttttgtgct ttagggatag ttgttaaagt tacaacttct tttattttat tttttaaagg
1741 cttcagatta aacaagagcc cttaagccca cgcatagcat tgccgcttca gcttgctgag
1801 gactgtctcc aaggaggcca aatggaaaag gagaggctac ttcaagtggt gttggcccat
1861 tgagcctatt gggcaaacta taaccaggtt gccttatttt gggtggatta ctccaggaga
1921 ggccaccctc cagctttctc ttatcccagt aactcctctt cccattttcc aatccatccc
1981 cagccatttt ttttttttct tctgtactct tcttttgcct tcaatatgag tttcatttcc
2041 tctgtgtctt tgggcagact tccttctaac atgtgtcagc taccctacca cacacctggc
2101 ctaggagaca catcattcat tgctcctact tgtgtctgta atcagagagt atttaaggag
2161 ggcagttctg cgacggactg tgtgtgtgtt gaaagtaaag atggggggcc gcggggaagg
2221 caagagtttt tccaaaagat tattagaaat gagggctgta tctactctgt ggagtagaac
2281 caagtctact tggagaaaag aaccaagtcc ttggatatct aggggaaagc tgtttggcag
2341 aaagaaaaat caagaggacc caaggggatg gagacaggac cacaggaatg ggccaaggag
2401 caacgtgcct gccattcagc cagcttggga caggctttca ctttcactcc catgaggagg
2461 cttccaggca gcctggttcc cccatgtata gccattgccc tctagcaggc caggcctccc
2521 agtgggaagg cctgggtcca gggcatctta agttcatcca gcagctccat gagccacaca
2581 gatatcctag aaaatattcc tttctcacac agggcttctg attactcaga aacatgcccc
2641 tcttccctga ataaccaaga acatgttcta tgaacccaat ctctgccaca tgtcaatacc
2701 tgctcttcaa agcccctttt gaaactcagt tttgtgccaa gtcctctgga tctaattacc
2761 ttaaacaagc agatttagcc atttttaaac agacattccc agtcatcctg gtgcttgtac
2821 ttctcctaca tgtcatgaag gaccttggat ttactgagaa ctcagccgtg gccttggctt
2881 tgatacttat aggtgtcagc ccttgggccg attgttgatc atccagagcc tcagttctgt
2941 acttgtaaag tggagacagc agttctcatc ctccatcctt ttagcccatg gggtggttgt
3001 aaggctggat tgaaatatgc atgtgactaa gccatgtagc tataaagtga gggatgactt
3061 gtgttttgga tcacttattt taattctact tataatccac ggcttagaat atttaaacat
3121 tgtttctatt aaactagaaa ggttcagcat ttctgtcatt tacttctgct atgatacaca
3181 agaacttatg ttggaatgaa gtgaaaagta aaatggccat tcttatgaac ctaaaaaaaa
3241 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaa
//