LOCUS BC033492 2703 bp mRNA linear HUM 11-AUG-2006
DEFINITION Homo sapiens SRY (sex determining region Y)-box 30, mRNA (cDNA
clone MGC:34408 IMAGE:5172577), complete cds.
ACCESSION BC033492
VERSION BC033492.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2703)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2703)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (26-JUN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 51 Row: i Column: 11
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 30581116.
FEATURES Location/Qualifiers
source 1..2703
/db_xref="H-InvDB:HIT000051121"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:34408 IMAGE:5172577"
/tissue_type="Brain, adult medulla"
/clone_lib="NIH_MGC_119"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2703
/gene="SOX30"
/db_xref="GeneID:11063"
/db_xref="HGNC:HGNC:30635"
/db_xref="MIM:606698"
CDS 343..2604
/gene="SOX30"
/codon_start=1
/product="SRY (sex determining region Y)-box 30"
/protein_id="AAH33492.2"
/db_xref="GeneID:11063"
/db_xref="HGNC:HGNC:30635"
/db_xref="MIM:606698"
/translation="MERARPEPPPQPRPLRPAPPPLPVEGTSFWAAAMEPPPSSPTLS
AAASATLASSCGEAVASGLQPAVRRLLQVKPEQVLLLPQPQAQNEEAAASSAQARLLQ
FRPDLRLLQPPTASDGATSRPELHPVQPLALHVKAKKQKLGPSLDQSVGPRGAVETGP
RASRVVKLEGPGPALGYFRGDEKGKLEAEEVMRDSMQGGAGKSPAAIREGVIKTEEPE
RLLEDCRLGAEPASNGLVHGSAEVILAPTSGAFGPHQQDLRIPLTLHTVPPGARIQFQ
GAPPSELIRLTKVPLTPVPTKMQSLLEPSVKIETKDVPLTVLPSDAGIPDTPFSKDRN
GHVKRPMNAFMVWARIHRPALAKANPAANNAEISVQLGLEWNKLSEEQKKPYYDEAQK
IKEKHREEFPGWVYQPRPGKRKRFPLSVSNVFSGTTKNIISTNPTTVYPYRSPTYSVV
IPSLQNPITHPVGETSPAIQLPTPAVQSPSPVTLFQPSVSSAAQVAVQDPSLPVYPAL
PPQRFTGPSQTDTHQLHSEATHTVKQPTPVSLESANRISSSASTAHARFATSTIQPPR
EYSSVSPCPRSAPIPQASPIPHPHVYQPPPLGHPATLFGTPPRFSFHHPYFLPGPHYF
PSSTCPYSRPPFGYGNFPSSMPECLSYYEDRYPKHEGIFSTLNRDYSFRDYSSECTHS
ENSRSCENMNGTSYYNSHSHSGEENLNPVPQLDIGTLENVFTAPTSTPSSIQQVNVTD
SDEEEEEKVLRDL"
BASE COUNT 713 a 792 c 677 g 521 t
ORIGIN
1 gggggaggga tgactaaaga caacggctgt aagagaactc cacaagagag tcagaacgaa
61 aatgtgcaac aagtgcggcg gctcctacca tggcaggtga ttcgaggact cagcacgagg
121 cgagagtagg gaccaggaag agccggaaaa cccgcctgtg attggccgtc cacgggtatc
181 ggtcgttgtg attgggtgag gcccagacag acagctgcgt tttgaaccgc gtagggttct
241 gggtagcaaa ggccttgcaa ggctcttaac cgaaaggggg agggggaagg tcgccaacaa
301 acggctgagc tcacaatcct ggccggggcg tccccctccc ccatggagag agccagaccc
361 gagccgccgc ctcagccgcg cccgttgcgt cccgctccgc ccccgctgcc ggtcgagggc
421 acctcctttt gggcagcagc catggagccc cctccgtcgt ctcccacact gagcgcggca
481 gccagtgcga ccttggcctc gtcgtgcggg gaggcagtgg cgtccggctt acagcccgcg
541 gtgcggcggc tgctgcaggt gaagccagag caggtgttgc tgctaccaca gcctcaggcc
601 cagaacgagg aagccgctgc ctcgtccgcg caggcgcggc tgttgcagtt caggcccgac
661 ctgcggctcc tgcagccgcc gacagcgtca gacggcgcca cctccaggcc cgagttgcac
721 ccggtgcagc ccctggcgct gcatgtcaag gccaagaagc agaagctggg gcccagcctg
781 gatcagtcag tggggcctcg aggggccgtc gaaaccggtc ctagagcctc cagggtggtc
841 aagttggaag gccccgggcc ggccctcggc tacttccgag gggacgagaa gggcaagctg
901 gaggcggagg aggtcatgag agactcgatg caaggcgggg caggcaaaag cccggcagcc
961 atccgagaag gtgtgatcaa aacggaggaa cccgagagac tcctcgagga ctgcaggctc
1021 ggcgcggagc ccgcgtccaa tggcctggtt catggcagcg cggaggtcat cttggcccca
1081 acgtccggtg cctttgggcc gcaccagcaa gaccttagga tccctttgac gctccacacg
1141 gtcccccctg gggcccggat ccagtttcag ggagctccgc cttcagagct gataagattg
1201 accaaggtcc ccctgacacc agtgcctact aaaatgcagt ccctactgga gccttctgta
1261 aaaattgaaa ccaaagatgt cccgctcacc gtgttgccct cagatgcagg cataccagat
1321 actcccttca gtaaggacag aaatggtcat gtgaagcgac ccatgaacgc atttatggtt
1381 tgggcaagga tccaccgacc agcactagcc aaagctaacc cagcagccaa caatgcagaa
1441 atcagtgtcc agcttgggtt agagtggaac aaacttagtg aagaacaaaa gaaaccctat
1501 tacgatgaag cacaaaagat taaggaaaag cacagagagg aatttcctgg ttgggtttat
1561 cagcctcgtc cagggaagcg aaaacgattc cctctaagtg tttccaatgt attttctggt
1621 accacaaaga atatcatctc tacaaatcct acaacagttt atccttaccg ctcacctacg
1681 tactctgtgg taattcccag cctacagaat cccatcactc atccagttgg tgaaacctca
1741 cctgctatcc agctgcccac acctgcagtc cagagcccaa gccctgtcac acttttccag
1801 cccagcgtct ccagtgctgc tcaggtggct gtccaggatc caagtctacc tgtctatcca
1861 gcactcccac cccaacgctt tactgggcct tcccaaacag acactcatca gctgcattct
1921 gaagccactc acactgtgaa gcaacccact cctgtctctc tagagagcgc caacaggatt
1981 tcaagtagtg caagtactgc ccatgccaga tttgcaactt cgaccatcca acctcctagg
2041 gagtattcca gcgtttcccc ttgtcccaga agtgctccaa tcccccaggc ttctcccatt
2101 ccacacccac atgtctacca gccccctccc cttggccatc cagccacact gttcgggaca
2161 ccaccaagat tctcttttca tcacccttac ttcctacccg gacctcacta cttcccatca
2221 agtacatgcc cttacagtcg gcctcccttt ggctatggaa attttccgag ttcaatgcca
2281 gaatgcctta gttattatga agacaggtac ccaaaacatg agggtatctt ttcaacttta
2341 aatagagact attcttttag agactactca agtgaatgca cacacagtga aaattctcgg
2401 agttgtgaga acatgaatgg aacttcttac tataacagtc atagccacag tggggaagaa
2461 aacttaaacc ctgtgcctca gctggacatt ggaaccttgg agaatgtctt cacagccccg
2521 acatcaactc cttctagcat ccagcaagtc aatgtcaccg acagtgatga ggaggaagaa
2581 gaaaaagtgc tcagggattt ataattttaa aacaaatatg cacagaaaat aaacatttct
2641 taaaatataa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
2701 aaa
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