LOCUS BC033220 2231 bp mRNA linear HTC 19-NOV-2003
DEFINITION Homo sapiens breast carcinoma amplified sequence 3, mRNA (cDNA
clone IMAGE:5018525), with apparent retained intron.
ACCESSION BC033220
VERSION BC033220.1
KEYWORDS HTC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2231)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2231)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (25-JUN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Steven Jones, Jennifer Asano, Ian Bosdet, Yaron Butterfield,
Susanna Chan, Readman Chiu, Chris Fjell, Erin Garland, Ran Guin,
Letticia Hsiao, Martin Krzywinski, Reta Kutsche, Oliver Lee, Soo
Sen Lee, Victor Ling, Carrie Mathewson, Candice McLeavy, Steven
Ness, Pawan Pandoh, Anna-Liisa Prabhu, Parvaneh Saeedi, Jacqueline
Schein, Duane Smailus, Michael Smith, Lorraine Spence, Jeff Stott,
Michael Thorne, Miranada Tsai, Natasja van den Bosch, Jill Vardy,
George Yang, Scott Zuyderduyn, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 43 Row: j Column: 24
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis
This clone has the following problem: retained intron.
FEATURES Location/Qualifiers
source 1..2231
/db_xref="H-InvDB:HIT000092987"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5018525"
/tissue_type="Pancreas, epithelioid carcinoma"
/clone_lib="NIH_MGC_42"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
BASE COUNT 515 a 635 c 593 g 488 t
ORIGIN
1 gaagagcaga acattaaaca gggtgttgtg aggattcatg gagcaaatgg ctgtgaaagc
61 accttgtaaa gggtagagca gtgtgcggcg tgagggatta ttatcattgt taagacgtct
121 acgcctcgtt gctcaccctg tgtgatcctg cagcttctca acttttccct cctttctccc
181 tggtttccac gcctgggctg ctgagtcagg cggaccggcc aaggctggcg agggctgaac
241 agatgctctg acatgtcaag ggaggaaatg acagttccca ggcagccctc tgtttcaggt
301 gtggaacagg ctccgaacac actttgtgtg ataaattcta gtaacgccag gctgagctct
361 acctccaccc ccttaggctg caagactagg acatgaggct gaaagtcaga gaagtccctg
421 tgagacgagg gccctgagca agcactggcc agactgtagc aaggccactc accaggccac
481 cccgctggtt ctacttccgc acccacctct ggcagccatg atgcttctgc agcatgccag
541 tttgttcact gagaccttca cagaaggtcg cacaaccacc ctggacggtg agaaactaag
601 gtgactgagg caagtcattg aaccaccctg agccttggct tcctcatcta tgaaatggag
661 ttgacagcat ctgtcctgcc tgtggtaaaa attgctgtga tcccacaacc aaaaggaaag
721 agagaattat gagaaaaata tgtacttatt ctgtgaaaat atgtgagatt ttcatgagag
781 acttcctgtt ccagtggact cttccaccgc ccttgagtgg ggaacatcca ggccttcaca
841 ctcacgctca gcccatcacc cctctgtgca aggtgcaagg tcctctgccc acctgaagcc
901 tcaaggcctg atggaaacca tccacagcca ctctagtacc tttgacagga gcgtgaccct
961 gctggaggtg tgcgggagct ggcctgaggg cttcgggctg cggcacatgt cctccatgga
1021 gcacacggag gagggcctcc gggagcgact tgccgacgcc atggccgagt cacctagccg
1081 ggacgtcgtg ggatccggaa caggcacagt gattcctatc aacaaggagg aagtgccagt
1141 gcgacctctg tgacccttca gagtcccctc tccaggtgct gccccaacat gaaagcagga
1201 attactgtgg aaaggcacag gcttggactg aggggctggg ggagggctgt tggaccccca
1261 gagccaggct ctcctctgga agcatcaaca tagacacagc ccttgacgta gcagtaaaaa
1321 ccttcccccc tgagagacac gtggcagtga agtgttttga acttcagcga gagggaagca
1381 tcgagactct gagtaacagc tcaggctcca ccagcggcag cataccaaga aactttgatg
1441 gctaccgatc tccgctgccc accaatgaga gccagcccct cagcctcttc ccgactggct
1501 tcccgtaggt accagcaacc tgcttctgac tggccagccc cctcccctgc tggaggaggg
1561 gagaagcccc gctctggtcc tacccttcag tctctgctct tccttcatca accaccttcc
1621 ccaagcttag tgacagcagc cgcccatcct acctggatgg agaagagacc cttctccaag
1681 cacctcagcg cacttgccct ctgccacacc tgtcggtgga ggctgtggcc aggagagact
1741 gtagaagctc ggtccctgtg tatgtttgca tatgacatcc tgcattggat ccgcttttgt
1801 attttttaac catacccacg gtggggcggg tggggggagc ctggaacagt gaccagatct
1861 gggggcctga gtggggacag agttgatcgt ccacctggcc attttgaccc tgagtggaca
1921 gtcacagcct cagctcatgt ctggctgtga cacacactgc ccccagcttc ccttggtcag
1981 ccccactcca gcacggggtg aacggaggcc cagagtacta gggaaggagg aagggaggac
2041 atgcctcttc ttcctccttt ctttccccat ctgttcctgg gaagagtttg tctttcttat
2101 ctttaagccc ctttaccctg gtcctgtact gatcagtgaa ggaaaccgtg gttactgagg
2161 ccctgttgaa aagtgcacgt cttgtccaat aaatcacgct gcagttggtg tccaaaaaaa
2221 aaaaaaaaaa a
//