LOCUS BC033210 2191 bp mRNA linear HUM 04-AUG-2008
DEFINITION Homo sapiens nuclear factor of kappa light polypeptide gene
enhancer in B-cells 1, mRNA (cDNA clone IMAGE:4906270), partial
cds.
ACCESSION BC033210
VERSION BC033210.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2191)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2191)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (25-JUN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 43 Row: i Column: 10.
FEATURES Location/Qualifiers
source 1..2191
/db_xref="H-InvDB:HIT000092982"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4906270"
/tissue_type="Muscle, rhabdomyosarcoma"
/clone_lib="NIH_MGC_17"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..2191
/gene="NFKB1"
/gene_synonym="EBP-1"
/gene_synonym="KBF1"
/gene_synonym="NF-kappa-B"
/gene_synonym="NFKB-p105"
/gene_synonym="NFKB-p50"
/gene_synonym="p105"
/db_xref="GeneID:4790"
/db_xref="HGNC:HGNC:7794"
/db_xref="MIM:164011"
CDS <1..1655
/gene="NFKB1"
/gene_synonym="EBP-1"
/gene_synonym="KBF1"
/gene_synonym="NF-kappa-B"
/gene_synonym="NFKB-p105"
/gene_synonym="NFKB-p50"
/gene_synonym="p105"
/codon_start=3
/product="NFKB1 protein"
/protein_id="AAH33210.1"
/db_xref="GeneID:4790"
/db_xref="HGNC:HGNC:7794"
/db_xref="MIM:164011"
/translation="FHPGTTKSNAGMKHGTMDTESKKDPEGCDKSDDKNTVNLFGKVI
ETTEQDQEPSEATVGNGEVTLTYATGTKEESAGVQDNLFLEKAMQLAKRHANALFDYA
VTGDVKMLLAVQRHLTAVQDENGDSVLHLAIIHLHSQLVRDLLEVTSGLISDDIINMR
NDLYQTPLHLAVITKQEDVVEDLLRAGADLSLLDRLGNSVLHLAAKEGHDKVLSILLK
HKKAALLLDHPNGDGLNAIHLAMMSNSLPCLLLLVAAGADVNAQEQKSGRTALHLAVE
HDNISLAGCLLLEGDAHVDSTTYDGTTPLHIAAGRGSTRLAALLKAAGADPLVENFEP
LYDLDDSWENAGEDEGVVPGTTPLDMATSWQVFDILNGKPYEPEFTSDDLLAQGDMKQ
LAEDVKLQLYKLLEIPDPDKNWATLAQKLGLGILNNAFRLSPAPSKTLMDNYEVSGGT
VRELVEALRQMGYTEAIEVIQAASSPVKTTSQAHSLPLSPASTRQQIDELRDSDSVCD
SGVETSFRKLSFTESLTSGASLLTLNKMPHDYGQEGPLEGKI"
BASE COUNT 613 a 521 c 535 g 522 t
ORIGIN
1 ctttccatcc tggaactact aaatctaatg ctgggatgaa gcatggaacc atggacactg
61 aatctaaaaa ggaccctgaa ggttgtgaca aaagtgatga caaaaacact gtaaacctct
121 ttgggaaagt tattgaaacc acagagcaag atcaggagcc cagcgaggcc accgttggga
181 atggtgaggt cactctaacg tatgcaacag gaacaaaaga agagagtgct ggagttcagg
241 ataacctctt tctagagaag gctatgcagc ttgcaaagag gcatgccaat gcccttttcg
301 actacgcggt gacaggagac gtgaagatgc tgctggccgt ccagcgccat ctcactgctg
361 tgcaggatga gaatggggac agtgtcttac acttagcaat catccacctt cattctcaac
421 ttgtgaggga tctactagaa gtcacatctg gtttgatttc tgatgacatt atcaacatga
481 gaaatgatct gtaccagacg cccttgcact tggcagtgat cactaagcag gaagatgtgg
541 tggaggattt gctgagggct ggggccgacc tgagccttct ggaccgcttg ggtaactctg
601 ttttgcacct agctgccaaa gaaggacatg ataaagttct cagtatctta ctcaagcaca
661 aaaaggcagc actacttctt gaccacccca acggggacgg tctgaatgcc attcatctag
721 ccatgatgag caatagcctg ccatgtttgc tgctgctggt ggccgctggg gctgacgtca
781 atgctcagga gcagaagtcc gggcgcacag cactgcacct ggctgtggag cacgacaaca
841 tctcattggc aggctgcctg ctcctggagg gtgatgccca tgtggacagt actacctacg
901 atggaaccac acccctgcat atagcagctg ggagagggtc caccaggctg gcagctcttc
961 tcaaagcagc aggagcagat cccctggtgg agaactttga gcctctctat gacctggatg
1021 actcttggga aaatgcagga gaggatgaag gagttgtgcc tggaaccacg cctctagata
1081 tggccaccag ctggcaggta tttgacatat taaatgggaa accatatgag ccagagttta
1141 catctgatga tttactagca caaggagaca tgaaacagct ggctgaagat gtgaagctgc
1201 agctgtataa gttactagaa attcctgatc cagacaaaaa ctgggctact ctggcgcaga
1261 aattaggtct ggggatactt aataatgcct tccggctgag tcctgctcct tccaaaacac
1321 ttatggacaa ctatgaggtc tctgggggta cagtcagaga gctggtggag gccctgagac
1381 aaatgggcta caccgaagca attgaagtga tccaggcagc ctccagccca gtgaagacca
1441 cctctcaggc ccactcgctg cctctctcgc ctgcctccac aaggcagcaa atagacgagc
1501 tccgagacag tgacagtgtc tgcgacagcg gcgtggagac atccttccgc aaactcagct
1561 ttaccgagtc tctgaccagt ggtgcctcac tgctaactct caacaaaatg ccccatgatt
1621 atgggcagga aggacctcta gaaggcaaaa tttagcctgc tgacaatttc ccacaccgtg
1681 taaaccaaag ccctaaaatt ccactgcgtt gtccacaaga cagaagctga agtgcatcca
1741 aaggtgctca gagagccggc ccgcctgaat cattctcgat ttaactcgag accttttcaa
1801 cttggcttcc tttcttggtt cataaatgaa ttttagtttg gttcacttac agatagtatc
1861 tagcaatcac aacactggct gagcggatgc atctggggat gaggttgctt actaagcttt
1921 gccagctgct gctggatcac agctgctttc tgttgtcatt gctgttgtcc ctctgctacg
1981 ttcctattgt cattaaaggt atcacggtcg ccacctggca ttccttctga ccacagcatc
2041 attttgcatt caaattaagg gttaagaaaa gagatatttt aaaatgagag tcacttgatg
2101 tgccatttta aaaaaaaaag gcatattgct ttttctaatg tggttatttc tctgatttgc
2161 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa a
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