LOCUS BC033207 1898 bp mRNA linear HUM 18-MAR-2009
DEFINITION Homo sapiens netrin 5, mRNA (cDNA clone MGC:45863 IMAGE:4903484),
complete cds.
ACCESSION BC033207
VERSION BC033207.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1898)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1898)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (25-JUN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 43 Row: i Column: 6
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 24308064.
FEATURES Location/Qualifiers
source 1..1898
/db_xref="H-InvDB:HIT000041840"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:45863 IMAGE:4903484"
/tissue_type="Muscle, rhabdomyosarcoma"
/clone_lib="NIH_MGC_17"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1898
/gene="NTN5"
/db_xref="GeneID:126147"
/db_xref="HGNC:HGNC:25208"
CDS 97..1566
/gene="NTN5"
/codon_start=1
/product="netrin 5"
/protein_id="AAH33207.1"
/db_xref="GeneID:126147"
/db_xref="HGNC:HGNC:25208"
/translation="MPVTFALLLLLGQATADPCYDPQGRPQFCLPPVTQLAAVAASCP
QACALSPGNHLGARETCNGSLTLALGGPFLLTSVSLRFCTPGPPALILSAAWASGGPW
RLLWHRPAWPGALGGPERVTFHSTPGPKATVAASHLRVEFGGQAGLAAAGLRGRCQCH
GHAARCAARARPPRCHCRHHTTGPGCESCRPSHRDWPWRPATPRHPHPCLPCSCNQHA
RRCRFNSELFRLSGGRSGGVCERCRHHTAGRHCHYCQPGFWRDPSQPIFSRRACRACQ
CHPIGATGGTCNQTSGQCTCKLGVTGLTCNRCGPGYQQSRSPRMPCQRIPEATTTLAT
TPGAYSSDPQCQNYCNMSDTRVHMSLRRYCQQDHVLRAQVLASEAAGPAWQRLAVRVL
AVYKQRAQPVRRGDQDAWVPRADLTCGCLRLQPGTDYLLLGSAVGDPDPTRLILDRHG
LALPWRPRWARPLKRLQQEERAGGCRGVRAPTPSPRPEH"
BASE COUNT 360 a 668 c 564 g 306 t
ORIGIN
1 gagagcccac cgcgccacag cttggaggaa gagcctgcgg ggaactggct gcaggacgct
61 ctcttcttga gtgcaggtgc tggctctgct gtgaccatgc ccgtgacctt tgccctcctg
121 ctcctcctgg gccaggccac tgcggaccca tgctacgatc cacagggccg cccccaattc
181 tgcctcccgc cagtgacaca gctggctgcc gtggcggcct cctgccctca ggcctgtgcc
241 ctgtccccag gaaaccacct tggcgccagg gaaacctgca atggcagcct gactttggcc
301 ctgggtggcc ccttcctcct gacatctgtc agcttgcgct tctgtacccc aggaccccca
361 gccctcatcc tgtctgctgc ctgggcctca gggggtccct ggaggctgct gtggcacagg
421 cccgcctggc ctggggcctt agggggccct gaaagggtga ccttccactc cacaccaggt
481 cctaaggcca ctgtggcggc cagccacctc cgtgtggagt ttgggggcca ggccgggcta
541 gcggcagctg ggctgagagg ccgctgccag tgtcatggcc acgctgcccg ctgtgccgcc
601 cgtgcccggc ccccccgctg ccactgccgc caccatacca ctggcccggg gtgcgagagc
661 tgccgcccgt cccatcgaga ctggccctgg cggcctgcca cgccccggca cccccaccct
721 tgcctaccct gctcctgcaa ccagcacgcc cgacgctgcc ggttcaactc tgagctgttc
781 agactgtcgg gcggccggag tgggggtgtt tgtgagcggt gccgccacca cacagctggg
841 cggcactgcc actactgcca acctgggttc tggagggacc ctagccagcc tatcttcagc
901 cgcagggcct gcagagcctg ccagtgccac cctattgggg caacaggagg aacctgcaac
961 cagaccagtg ggcagtgcac ctgcaagtta ggggtcacag gcctgacctg caaccgctgt
1021 ggccctggct accagcagag ccgctccccc aggatgccct gccagcgaat tccagaggca
1081 acaaccaccc ttgccactac tcctggtgct tatagctctg accctcagtg tcaaaactac
1141 tgcaatatgt cggacaccag ggtacacatg agccttcgga ggtactgcca gcaggaccat
1201 gttctccgcg cgcaggtgct agcgtccgag gcggcgggcc cggcatggca gcggctggcc
1261 gtgcgcgtgc tggccgttta caagcagcgg gcgcagcccg tgcgacgcgg cgaccaggac
1321 gcctgggtgc cccgcgccga cctgacctgc ggctgcctgc gcctgcagcc aggcaccgac
1381 tacctgctgc tgggcagcgc cgtgggcgac cccgacccca cgcgcctcat cctcgaccgc
1441 cacggcctcg cgctgccatg gaggccgcgc tgggcccggc ccctgaagcg gctgcagcag
1501 gaggagcgcg ccggaggctg ccgcggcgtg cgggcaccca cacccagccc caggccggag
1561 cactagacgt gagatggggc tgcctcgagc accaacaaag taatttggga gcgactagga
1621 gctgagcctt ctacctcgac ggtgcactgc agagagccaa tcagacgtcg cagagccccg
1681 acgacactat gcttgcgccc acgccgagca ggcgtgcgga acttttagca aaaggcggca
1741 agcgggactt ctggtcccag catttcctcc tttggcctgt ggcttattcc ccgccagtga
1801 tctgtttccc ccaataaagt ctcaaatctt tgggaaaaaa aaaaaaaaaa aaaaaaaaaa
1861 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaa
//