LOCUS BC033203 2036 bp mRNA linear HUM 26-JUN-2007
DEFINITION Homo sapiens SH3 domain containing ring finger 1, mRNA (cDNA clone
IMAGE:4875526), partial cds.
ACCESSION BC033203
VERSION BC033203.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2036)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2036)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (25-JUN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 43 Row: h Column: 9.
FEATURES Location/Qualifiers
source 1..2036
/db_xref="H-InvDB:HIT000092979"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4875526"
/tissue_type="Eye, normal, pigmented retinal epithelium"
/clone_lib="NIH_MGC_43"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..>2036
/gene="SH3RF1"
/gene_synonym="POSH"
/gene_synonym="RNF142"
/db_xref="GeneID:57630"
/db_xref="HGNC:HGNC:17650"
CDS 399..>2036
/gene="SH3RF1"
/gene_synonym="POSH"
/gene_synonym="RNF142"
/codon_start=1
/product="SH3RF1 protein"
/protein_id="AAH33203.1"
/db_xref="GeneID:57630"
/db_xref="HGNC:HGNC:17650"
/translation="MGKSMESMAFFPTNFVQIIKPLPQPPPQCKALYDFEVKDKEADK
DCLPFAKDDVLTVIRRVDENWAEGMLADKIGIFPISYVEFNSAAKQLIEWDKPPVPGV
DAGECSSAAAQSSTAPKHSDTKKNTKKRHSFTSLTMANKSSQASQNRHSMEISPPVLI
SSSNPTAAARISELSGLSCSAPSQVHISTTGLIVTPPPSSPVTTGPSFTFPSDVPYQA
ALGTLNPPLPPPPLLAATVLASTPPGATAAAAAAGMGPRPMAGSTDQIAHLRPQTRPS
VYVAIYPYTPRKEDELELRKGEMFLVFERCQDGWFKGTSMHTSKIGVFPGNYVAPVTR
AVTNASQAKVPMSTAGQTSRGVTMVSPSTAGGPAQKLQGNGVAGSPSVVPAAVVSAAH
IQTSPQAKVLLHMTGQMTVNQARNAVRTVAAHNQERPTAAVTPIQVQNAAGLSPASVG
LSHHSLASPQPAPLMPGSATHTAAISISRASAPLACAAAAPLTSPSITSASLEAEPSG
RIVTVLPGLPTSPDSASSACGNSSATKPDKDSKKKKKK"
BASE COUNT 512 a 593 c 505 g 426 t
ORIGIN
1 cgtaggttct cgaaatgaac tcagatgtcc cgagtgcagg actcttgttg gctcgggtgt
61 cgaggagctt cccagtaaca tcttgctggt cagacttctg gatggcatca aacagaggcc
121 ttggaaacct ggtcctggtg ggggaagtgg gaccaactgc acaaatgcat taaggtctca
181 gagcagcact gtggctaatt gtagctcaaa agatctgcag agctcccagg gcggacagca
241 gcctcgggtg caatcctgga gccccccagt gaggggtata cctcagttac catgtgccaa
301 agcattatac aactatgaag gaaaagagcc tggagacctt aaattcagca aaggtgacat
361 catcattttg cgaagacaag tggatgaaaa ttggtaccat ggggaagtca atggaatcca
421 tggctttttt ccccaccaac tttgtgcaga ttattaaacc gttacctcag cccccacctc
481 agtgcaaagc actttatgac tttgaagtga aagacaagga agcagacaaa gattgccttc
541 catttgcaaa ggatgatgtt ctgactgtga tccgaagagt ggatgaaaac tgggctgaag
601 gaatgctggc agacaaaata ggaatatttc caatttcata tgttgagttt aactcggctg
661 ctaagcagct gatagaatgg gataagcctc ctgtgccagg agttgatgct ggagaatgtt
721 cctcggcagc agcccagagc agcactgccc caaagcactc cgacaccaag aagaacacca
781 aaaagcggca ctccttcact tccctcacta tggccaacaa gtcctcccag gcatcccaga
841 accgccactc catggagatc agcccccctg tcctcatcag ctccagcaac cccactgctg
901 ctgcacggat cagcgagctg tctgggctct cctgcagtgc cccttctcag gttcatataa
961 gtaccaccgg gttaattgtg accccgcccc caagcagccc agtgacaact ggcccctcgt
1021 ttactttccc atcagatgtt ccctaccaag ctgcccttgg aactttgaat cctcctcttc
1081 caccaccccc tctcctggct gccactgtcc ttgcctccac accaccaggc gccaccgccg
1141 ctgctgctgc tgctggaatg ggaccgaggc ccatggcagg atccactgac cagattgcac
1201 atttacggcc gcagactcgc cccagtgtgt atgttgctat atatccatac actcctcgga
1261 aagaggatga actagagctg agaaaagggg agatgttttt agtgtttgag cgctgccagg
1321 atggctggtt caaagggaca tccatgcata ccagcaagat aggggttttc cctggcaatt
1381 atgtggcacc agtcacaagg gcggtgacaa atgcttccca agctaaagtc cctatgtcta
1441 cagctggcca gacaagtcgg ggagtgacca tggtcagtcc ttccacggca ggagggcctg
1501 cccagaagct ccagggaaat ggcgtggctg ggagtcccag tgttgtcccc gcagctgtgg
1561 tatcagcagc tcacatccag acaagtcctc aggctaaggt cttgttgcac atgacggggc
1621 aaatgacagt caaccaggcc cgcaatgctg tgaggacagt tgcagcgcac aaccaggaac
1681 gccccacggc agcagtgaca cccatccagg tacagaatgc cgccggcctc agccctgcat
1741 ctgtgggcct gtcccatcac tcgctggcct ccccacaacc tgcgcctctg atgccaggct
1801 cagccacgca cactgctgcc atcagtatca gtcgagccag tgcccctctg gcctgtgcag
1861 cagctgctcc actgacttcc ccaagcatca ccagtgcttc tctggaggct gagcccagtg
1921 gccggatagt gaccgttctc cctggactcc ccacatctcc tgacagtgct tcatcagctt
1981 gtgggaacag ttcagcaacc aaaccagaca aggatagcaa aaaaaaaaaa aaaaaa
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