LOCUS BC033174 3721 bp mRNA linear HUM 27-JUN-2002
DEFINITION Homo sapiens, Similar to collagen, type VI, alpha 3, clone
IMAGE:4560529, mRNA, partial cds.
ACCESSION BC033174
VERSION BC033174.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3721)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (25-JUN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Steven Jones, Jennifer Asano, Ian Bosdet, Yaron Butterfield,
Susanna Chan, Readman Chiu, Chris Fjell, Erin Garland, Ran Guin,
Letticia Hsiao, Martin Krzywinski, Reta Kutsche, Oliver Lee, Soo
Sen Lee, Victor Ling, Carrie Mathewson, Candice McLeavy, Steven
Ness, Pawan Pandoh, Anna-Liisa Prabhu, Parvaneh Saeedi, Jacqueline
Schein, Duane Smailus, Michael Smith, Lorraine Spence, Jeff Stott,
Michael Thorne, Miranada Tsai, Natasja van den Bosch, Jill Vardy,
George Yang, Scott Zuyderduyn, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 43 Row: e Column: 16
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis.
FEATURES Location/Qualifiers
source 1..3721
/db_xref="H-InvDB:HIT000092967"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4560529"
/tissue_type="Kidney, renal cell adenocarcinoma"
/clone_lib="NIH_MGC_14"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
CDS <1..2942
/codon_start=3
/product="Similar to collagen, type VI, alpha 3"
/protein_id="AAH33174.1"
/translation="GFGRRGPPGAKGNKGGPGQPGFEGEQGTRGAQGPAGPAGPPGLI
GEQGISGPRGSGGAAGAPGERGRTGPLGRKGEPGEPGPKGGIGNRGPRGETGDDGRDG
VGSEGRRGKKGERGFPGYPGPKGNPGEPGLNGTTGPKGIRGRRGNSGPPGIVGQKGDP
GYPGPAGPKGNRGDSIDQCALIQSIKDKCPCCYGPLECPVFPTELAFALDTSEGVNQD
TFGRMRDVVLSIVNDLTIAESNCPRGARVAVVTYNNEVTTEIRFADSKRKSVLLDKIK
NLQVALTSKQQSLETAMSFVARNTFKRVRNGFLMRKVAVFFSNTPTRASPQLREAVLK
LSDAGITPLFLTRQEDRQLINALQINNTAVGHALVLPAGRDLTDFLENVLTCHVCLDI
CNIDPSCGFGSWRPSFRDRRAAGSDVDIDMAFILDSAETTTLFQFNEMKKYIAYLVRQ
LDMSPDPKASQHFARVAVVQHAPSESVDNASMPPVKVEFSLTDYGSKEKLVDFLSRGM
TQLQGTRALGSAIEYTIENVFESAPNPRDLKIVVLMLTGEVPEQQLEEAQRVILQAKC
KGYFFVVLGIGRKVNIKEVYTFASEPNDVFFKLVDKSTELNEEPLMRFGRLLPSFVSS
ENAFYLSPDIRKQCDWFQGDQPTKNLVKFGHKQVNVPNNVTSSPTSNPVTTTKPVTTT
KPVTTTTKPVTTTTKPVTIINQPSVKPAAAKPAPAKPVAAKPVATKMATVRPPVAVKP
ATAAKPVAAKPAAVRPPAAAAAKPVATKPEVPRPQAAKPAATKPATTKPMVKMSREVQ
VFEITENSAKLHWERAEPPGPYFYDLTVTSAHDQSLVLKQNLTVTDRVIGGLLAGQTY
HVAVVCYLRSQVRATYHGSFSTKKSQPPPPQPARSASSSTINLMVSTEPLALTETDIC
KLPKDEGTCRDFILKWYYDPNTKSCARFWYGGCGGNENKFGSQKECEKVCAPVLAKPG
VISVMGT"
BASE COUNT 1004 a 927 c 980 g 810 t
ORIGIN
1 gtggctttgg ccgaagggga ccccccggag ctaagggcaa caagggcggt cctggccagc
61 cgggctttga gggagagcag gggaccagag gtgcacaggg cccagctggt cctgctggtc
121 ctccagggct gataggagaa caaggcattt ctggacctcg gggaagcgga ggtgccgctg
181 gtgctcctgg agaacgaggc agaaccggtc cactgggaag aaagggtgag cccggagagc
241 caggaccaaa aggaggaatc gggaaccggg gccctcgtgg ggagacggga gatgacggga
301 gagacggagt tggcagtgaa ggacgcagag gcaaaaaagg agaaagagga ttccctggat
361 acccaggacc aaagggtaac ccaggtgaac ctgggctaaa tggaacaaca ggacccaaag
421 gcatcagagg ccgaagggga aattcgggac ctccagggat agttggacag aagggagacc
481 ctggctaccc aggaccagct ggtcccaagg gcaacagggg cgactccatc gatcaatgtg
541 ccctcatcca aagcatcaaa gataaatgcc cttgctgtta cgggcccctg gagtgccccg
601 tcttcccaac agaactagcc tttgctttag acacctctga gggagtcaac caagacactt
661 tcggccggat gcgagatgtg gtcttgagta ttgtgaatga cctgaccatt gctgagagca
721 actgcccacg gggggcccgg gtggctgtgg tcacctacaa caacgaggtg accacggaga
781 tccggtttgc tgactccaag aggaagtcgg tcctcctgga caagattaag aaccttcagg
841 tggctctgac atccaaacag cagagtctgg agactgccat gtcgtttgtg gccaggaaca
901 catttaagcg tgtgaggaac ggattcctaa tgaggaaagt ggctgttttc ttcagcaaca
961 cacccacaag agcatcccca cagctcagag aggctgtgct caagctctca gatgcgggga
1021 tcaccccctt gttccttaca aggcaggaag accggcagct catcaacgct ttgcagatca
1081 ataacacagc agtggggcat gcgcttgtcc tgcctgcagg gagagacctc acagacttcc
1141 tggagaatgt cctcacgtgt catgtttgct tggacatctg caacatcgac ccatcctgtg
1201 gatttggcag ttggaggcct tccttcaggg acaggagagc ggcagggagc gatgtggaca
1261 tcgacatggc tttcatctta gacagcgctg agaccaccac cctgttccag ttcaatgaga
1321 tgaagaagta catagcgtac ctggtcagac aactggacat gagcccagat cccaaggcct
1381 cccagcactt cgccagagtg gcagttgtgc agcacgcgcc ctctgagtcc gtggacaatg
1441 ccagcatgcc acctgtgaag gtggaattct ccctgactga ctatggctcc aaggagaagc
1501 tggtggactt cctcagcagg ggaatgacac agttgcaggg aaccagggcc ttaggcagtg
1561 ccattgaata caccatagag aatgtctttg aaagtgcccc aaacccacgg gacctgaaaa
1621 ttgtggtcct gatgctgacg ggcgaggtgc cggagcagca gctggaggag gcccagagag
1681 tcatcctgca ggccaaatgc aagggctact tcttcgtggt cctgggcatt ggcaggaagg
1741 tgaacatcaa ggaggtatac accttcgcca gtgagccaaa cgacgtcttc ttcaaattag
1801 tggacaagtc caccgagctc aacgaggagc ctttgatgcg cttcgggagg ctgttgccat
1861 ccttcgtcag cagtgaaaat gctttttact tgtccccaga tatcaggaaa cagtgtgatt
1921 ggttccaagg ggaccaaccc acaaagaacc ttgtgaagtt tggtcacaaa caagtaaatg
1981 ttccgaataa cgttacttca agtcctacat ccaacccagt gacgacaacg aagccggtga
2041 ctacgacgaa gccggtgacc accacaacaa agcctgtaac caccacaaca aagcctgtga
2101 ctattataaa tcagccatct gtgaagccag ccgctgcaaa gccggcccct gcgaaacctg
2161 tggctgccaa gcctgtggcc acaaagatgg ccactgttag acccccagtg gcggtgaagc
2221 cagcaacggc agcgaagcct gtagcagcaa agccagcagc tgtaagaccc cccgctgctg
2281 ctgctgcaaa accagtggcg accaagcctg aggtccctag gccacaggca gccaaaccag
2341 ctgccaccaa gccagccacc actaagccca tggttaagat gtcccgtgaa gtccaggtgt
2401 ttgagataac agagaacagc gccaaactcc actgggagag ggctgagccc cccggtcctt
2461 atttttatga cctcaccgtc acctcagccc atgatcagtc cctggttctg aagcagaacc
2521 tcacggtcac ggaccgcgtc attggaggcc tgctcgctgg gcagacatac catgtggctg
2581 tggtctgcta cctgaggtct caggtcagag ccacctacca cggaagtttc agtacaaaga
2641 aatctcagcc cccacctcca cagccagcaa ggtcagcttc tagttcaacc atcaatctaa
2701 tggtgagcac agaaccattg gctctcactg aaacagatat atgcaagttg ccgaaagacg
2761 aaggaacttg cagggatttc atattaaaat ggtactatga tccaaacacc aaaagctgtg
2821 caagattctg gtatggaggt tgtggtggaa acgaaaacaa atttggatca cagaaagaat
2881 gtgaaaaggt ttgcgctcct gtgctcgcca aacccggagt catcagtgtg atgggaacct
2941 aagcgtgggt ggccaacatc atatacctct tgaagaagaa ggagtcagcc atcgccaact
3001 tgtctctgta gaagctccgg gtgtagattc ccttgcactg tatcatttca tgctttgatt
3061 tacactcgaa ctcgggaggg aacatcctgc tgcatgacct atcagtatgg tgctaatgtg
3121 tctgtggacc ctcgctctct gtctccaggc agttctctcg aatactttga atgttgtgta
3181 acagttagcc actgctggtg tttatgtgaa cattcctatc aatccaaatt ccctctggag
3241 tttcatgtta tgcctgttgc aggcaaatgt aaagtctaga aaataatgca aatgtcacgg
3301 ctactctata tacttttgct tggttcattt tttttccctt ttagttaagc atgactttag
3361 atgggaagcc tgtgtatcgt ggagaaacaa gagaccaact ttttcattcc ctgcccccaa
3421 tttcccagac tagatttcaa gctaattttc tttttctgaa gcctctaaca aatgatctag
3481 ttcagaagga agcaaaatcc cttaatctat gtgcaccgtt gggaccaatg ccttaattaa
3541 agaatttaaa aaagttgtaa tagagaatat ttttggcatt cctctaatgt tgtgtgtttt
3601 ttttttttgt gtgctggagg gaggggattt aattttaatt ttaaaatgtt taggaaattt
3661 atacaaagaa actttttaat aaagtatatt gaaagtttaa acaaaaaaaa aaaaaaaaaa
3721 a
//