LOCUS BC033037 1978 bp mRNA linear HUM 21-JUL-2005
DEFINITION Homo sapiens chromosome 9 open reading frame 43, mRNA (cDNA clone
MGC:33654 IMAGE:4827930), complete cds.
ACCESSION BC033037
VERSION BC033037.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1978)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1978)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (21-JUN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 25, 2003 this sequence version replaced BC033037.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 47 Row: a Column: 13
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 22749538.
FEATURES Location/Qualifiers
source 1..1978
/db_xref="H-InvDB:HIT000041772"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:33654 IMAGE:4827930"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..1978
/gene="C9orf43"
/gene_synonym="MGC17358"
/db_xref="GeneID:257169"
CDS 366..1751
/gene="C9orf43"
/gene_synonym="MGC17358"
/codon_start=1
/product="C9orf43 protein"
/protein_id="AAH33037.1"
/db_xref="GeneID:257169"
/translation="MDLPDESQWDETTCGLAVCQHPQCWATIRRIERGHPRILGSSCK
TPLDAEDKLPVLTVVDILDSGFAAHHLPECTFTKAHSLLSQSSKFYSKFHGRPPKGLP
DKSLINCTNRLPKFPVLNLNETQLPCPEDVRNMVVLWIPEETEIHVSQHGKKKRKNSA
VKSKSFLGLSGNQSAGTRVGTPGMIVPPPTPVQLSEQFSSDFLPLWAQSEALPQDLLK
ELLPGGKQTMLCPEMKIKLAMMKKNLPLEKNRPDSVISSKMFLSIHRLTLERPALRYP
ERLKKLHNLKTEGYRKQQQRQQQQQQQQKKVKTPIKKQEAKKKAKSDPGIQSTSHKHP
VTTVHDRLYGYRTLPGQNSDMKQQQQMEKGTTSKQDSTERPKMNYYDHADFHHSVKSP
ELYETEPTNKDISAPVDAVPEAQAARQKKISFNFSEIMASTGWNSELKLLRILQDTDD
EDEEDQSSGAE"
BASE COUNT 561 a 481 c 477 g 459 t
ORIGIN
1 gcggccgggc gcagcgcgtg ggagacgaag gcgtggctga ctcggcgggg cggatccctt
61 taggacccga ggcaggctct gggcccgccg ggtccgttaa tctcaccgcg ccgcaagggg
121 ccacgtttta ccacttgatt tagcaaccct aagcggtttg gaatctgctt tgctctcaca
181 ggacctcagc ccgtcgtgat cagattctcc cactttcttt tttctttcct ggaatggagt
241 gggcagtctt tttccatctc taccgaagtt gatgttcatt tttaatcttt tcgcccctca
301 cgcttttgta ataatgagca ctagaatgct gcagggttgg cctttggcct aaaccatttc
361 tagctatgga cttgccagat gagagccagt gggacgaaac cacctgtggc ttggctgttt
421 gtcagcaccc acaatgctgg gcaactatcc gccgcattga gaggggccat cctcgaatcc
481 tcggctcatc ctgcaaaact cccctggatg ctgaagataa actcccagtg ctcaccgtgg
541 tagacatctt agattccggc tttgcagctc atcatttacc agaatgtacc tttactaagg
601 cccattcttt attgtctcag agttcaaagt tttactccaa atttcatggc aggcctccga
661 agggtttacc tgacaaaagt ttgatcaact gtactaacag acttcccaaa tttccagtgt
721 tgaatttgaa tgagacgcaa cttccctgcc ctgaagatgt tagaaatatg gttgtattgt
781 ggatcccaga agaaacagag atacatgtga gccagcatgg gaagaagaaa agaaagaact
841 cggcagtgaa aagcaagtca tttctgggtc tctctggaaa tcagtccgca ggaacacgag
901 taggaacacc agggatgatc gtgcctcccc caaccccagt gcaattgtct gaacaattca
961 gttcagattt cctacctctc tgggctcaat ccgaagcgtt acctcaggat ctactgaagg
1021 aacttttgcc aggtggaaag caaaccatgc tctgtccaga gatgaagata aaattggcca
1081 tgatgaaaaa gaatcttccc ttggaaaaga accgacctga cagtgtgatt tcttctaaga
1141 tgtttctatc tatacaccgc ctcaccctgg aaagaccagc actgcgatat cctgaacgtt
1201 tgaagaaatt acataacctg aagacagaag gttacaggaa acagcagcag cggcagcagc
1261 agcagcagca gcaacagaag aaggtgaaaa cacctattaa gaaacaggag gctaaaaaga
1321 aagccaagag tgatccaggg atccagagca cttcacataa acatccagtt accaccgttc
1381 atgaccgtct ctatggttac agaactctgc caggtcagaa cagtgacatg aagcagcagc
1441 agcagatgga aaaaggaacc acttcgaaac aggattccac ggagagacca aagatgaact
1501 actatgacca tgcggatttc caccacagtg taaaaagtcc tgaattgtat gaaacagaac
1561 ccactaacaa ggacattagt gctccagtgg acgctgtgcc agaagcccag gctgccaggc
1621 aaaagaagat ctcctttaac ttttcagaaa ttatggctag cacaggctgg aactctgagc
1681 tcaaactact taggattctt caggacactg atgatgagga tgaggaggac cagtcctctg
1741 gggcagagtg agaagcctct ggaggaatag actgaaggca tcccctgggg cagccgtgtt
1801 ccaaagcggg atggctggta tcctgagggc agcaacgttt cacataaggg caagaggaga
1861 ggggcttctg ctctctggag cctttaccag ggcctgagct ctgagcttag ggattccatt
1921 ttctttgttc acctctactt gcctctaaaa taaatgtagg agaaaaaaaa aaaaaaaa
//