LOCUS BC032832 1092 bp mRNA linear HUM 19-MAR-2009
DEFINITION Homo sapiens spermatogenesis associated 9, mRNA (cDNA clone
MGC:26751 IMAGE:4827641), complete cds.
ACCESSION BC032832
VERSION BC032832.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1092)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1092)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (07-JUN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 34 Row: b Column: 8
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 50659063
The stop codon of the CDS annotated on this record is located > 55
bases upstream of a splice junction, and therefore the mRNA is
predicted to be subject to nonsense-mediated mRNA decay (NMD).
FEATURES Location/Qualifiers
source 1..1092
/db_xref="H-InvDB:HIT000092829"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:26751 IMAGE:4827641"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..1092
/gene="SPATA9"
/gene_synonym="NYD-SP16"
/db_xref="GeneID:83890"
/db_xref="HGNC:HGNC:22988"
/db_xref="MIM:608039"
CDS 162..569
/gene="SPATA9"
/gene_synonym="NYD-SP16"
/codon_start=1
/product="SPATA9 protein"
/protein_id="AAH32832.1"
/db_xref="GeneID:83890"
/db_xref="HGNC:HGNC:22988"
/db_xref="MIM:608039"
/translation="MPIKPVGWICGQVLKNFSGRIEGIQKAIMDLVDEFKDEFPTILR
LSQSNQKREPAQKTSKIRMAIALAKINRATLIRGLNSISRSSKSVAKLLHPQLACRLL
ELRDISGRLLREVNAPRQPLYNIQEKKMGLQLS"
BASE COUNT 383 a 213 c 232 g 264 t
ORIGIN
1 agcggagtaa caaagaattc cagcagtgag ctgtgagttc tgtccttgct ggctttccta
61 agtggaaggc taccctcatc tttcactaat ggcagactag gacaagcatt acccaggcct
121 gcaagcttgt taaggactag gaacccaagc aagaactcac catgccaatc aaacctgttg
181 ggtggatatg tgggcaggtg ttgaagaact tttctggaag aatcgagggg atccagaaag
241 caatcatgga ccttgtagat gagtttaaag atgaatttcc caccatccta agattatcac
301 agtctaatca gaaaagagaa cctgcgcaga aaacatccaa aatcaggatg gctattgctt
361 tagctaagat taatcgagca acattaattc gtggattaaa cagcatatcc agatcctcca
421 aatcagtggc caaacttctg catcctcagc ttgcatgcag acttttagag ctaagggaca
481 tatctggtcg tctgctgagg gaagttaatg cgccgaggca acccctatat aacattcagg
541 agaagaaaat ggggctccaa ttgagttaaa ccaaaaaaga agatgtatta gctcccataa
601 acaacccaga gctgttgaga ttcccgacat ggctggatac aggtcagaaa gggttctttg
661 tttgaaatca tctcctttcc agcaaagact gctttaacta gcataatata tgcttcatat
721 gcagcactaa tttatttggc agtctgtgtt aatgctgtgc tgaagaaggt aaagaacatc
781 ttccaggaag aagaatccat aaggcaaaac agagaggaga gtgaaaattg tagaaaagcc
841 ttttctgagc ctgtgctttc ggagcctatg tttgctgaag gtgaaatcaa agcaaaacct
901 tataggtcat tgccggagaa gccagacatt tcagattacc ccaagcttct tgctaataag
961 cagagtaata acatccaagt tttacattct gtgtttgacc aatcagctga aatgaatgag
1021 caaatctgaa tacaggtatc actgaacaga aaaaaaaaaa aaaaaaaaaa aaaaaagaaa
1081 aaaaaaaaaa aa
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