LOCUS BC032811 564 bp mRNA linear HUM 08-FEB-2007
DEFINITION Homo sapiens trefoil factor 1, mRNA (cDNA clone MGC:45303
IMAGE:5186922), complete cds.
ACCESSION BC032811
VERSION BC032811.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 564)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 564)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (06-JUN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 68 Row: l Column: 7
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 48928023.
FEATURES Location/Qualifiers
source 1..564
/db_xref="H-InvDB:HIT000041732"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:45303 IMAGE:5186922"
/tissue_type="Colon, Kidney, Stomach, adult, whole pooled"
/clone_lib="NIH_MGC_116"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..564
/gene="TFF1"
/gene_synonym="D21S21"
/gene_synonym="HP1.A"
/gene_synonym="HPS2"
/gene_synonym="pNR-2"
/gene_synonym="pS2"
/db_xref="GeneID:7031"
/db_xref="HGNC:HGNC:11755"
/db_xref="MIM:113710"
CDS 25..279
/gene="TFF1"
/gene_synonym="D21S21"
/gene_synonym="HP1.A"
/gene_synonym="HPS2"
/gene_synonym="pNR-2"
/gene_synonym="pS2"
/codon_start=1
/product="trefoil factor 1"
/protein_id="AAH32811.1"
/db_xref="GeneID:7031"
/db_xref="HGNC:HGNC:11755"
/db_xref="MIM:113710"
/translation="MATMENKVICALVLVSMLALGTLAEAQTETCTVAPRERQNCGFP
GVTPSQCANKGCCFDDTVRGVPWCFYPNTIDVPPEEECEF"
BASE COUNT 193 a 140 c 125 g 106 t
ORIGIN
1 cgcctttgga gcagagagga ggtaatggcc accatggaga acaaggtgat ctgcgccctg
61 gtcctggtgt ccatgctggc cctcggcacc ctggccgagg cccagacaga gacgtgtaca
121 gtggcccccc gtgaaagaca gaattgtggt tttcctggtg tcacgccctc ccagtgtgca
181 aataagggct gctgtttcga cgacaccgtt cgtggggtcc cctggtgctt ctatcctaat
241 accatcgacg tccctccaga agaggagtgt gaattttaga cacttctgca gggatctgcc
301 tgcatcctga cgcggtgccg tccccagcac ggtgattagt cccagagctc ggctgccacc
361 tccaccggac acctcagaca cgcttctgca gctgtgcctc ggctcacaac acagattgac
421 tgctctgact ttgactactc aaaattggcc taaaaattaa aagagatcga tattaaaaaa
481 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
541 aaaaaaaaaa aaaaaaaaaa aaaa
//