LOCUS BC032792 1139 bp mRNA linear HUM 30-SEP-2003
DEFINITION Homo sapiens PHD finger protein 13, mRNA (cDNA clone
IMAGE:3878461), partial cds.
ACCESSION BC032792
VERSION BC032792.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1139)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1139)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (06-JUN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Sep 16, 2003 this sequence version replaced BC032792.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP/Gazdar
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 68 Row: c Column: 8.
FEATURES Location/Qualifiers
source 1..1139
/db_xref="H-InvDB:HIT000092809"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3878461"
/tissue_type="Lung, large cell carcinoma"
/clone_lib="NIH_MGC_68"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene <1..1139
/gene="PHF13"
/gene_synonym="MGC43399"
/db_xref="GeneID:148479"
CDS <1..701
/gene="PHF13"
/gene_synonym="MGC43399"
/codon_start=3
/product="PHF13 protein"
/protein_id="AAH32792.2"
/db_xref="GeneID:148479"
/translation="TRGAGFSDIASSVPLPVSDRCFSHLQPTLLQRAKPSNFLLDRKK
TDKLKKKKKRKRRDSDAPGKEGYRGGLLKLEAADPYVETPTSPTLQDIPQAPSDPCSG
WDSDTPSSGSCATVSPDQVKEIKTEGKRTIVRQGKQVVFRDEDSTGNDEDIMVDSDDD
SWDLVTCFCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRDSKFDIRR
SNRSRTGSRKLFLD"
misc_feature 501..632
/gene="PHF13"
/gene_synonym="MGC43399"
/note="PHD; Region: PHD-finger. PHD folds into an
interleaved type of Zn-finger chelating 2 Zn ions in a
similar manner to that of the RING and FYVE domains"
/db_xref="CDD:pfam00628"
BASE COUNT 262 a 302 c 334 g 241 t
ORIGIN
1 ggacgcgtgg ggcgggtttc tcagacatcg cgtcctcagt gcccttgcca gtctctgacc
61 gctgctttag ccacctgcag cctactctct tgcagcgagc caagcccagt aacttcctgc
121 tggacagaaa gaaaacggac aagctgaaga agaagaagaa gaggaagcgc agggacagtg
181 atgcgcctgg gaaagagggg tacagggggg gcttgctgaa gctggaagcc gctgacccct
241 acgtggagac ccccacgagt cccaccttgc aggatatccc ccaggctccc agcgacccct
301 gctcgggctg ggactccgat actccctcga gtggatcttg tgccactgtg tcacctgatc
361 aggtcaaaga aataaaaact gaaggcaaac ggactatcgt ccggcaggga aagcaggtgg
421 tgttccgaga tgaggacagc actggcaatg atgaggacat catggtggac tcagatgacg
481 attcctggga cctcgtgacc tgcttctgca tgaagccatt tgccggccgc cccatgatcg
541 agtgtaatga gtgccacacc tggattcacc tgtcctgtgc gaaaatccgg aaatccaatg
601 ttccagaagt gtttgtctgc caaaagtgcc gggactccaa gtttgacatc cgccgttcca
661 accgctcgcg gacgggctcc cggaagctgt tcctggactg actgctggct ggcgaggagg
721 ctgcgagcgt ggaatcggaa gcgaccgtgg gcttttttgc ccttctctta gttgagcaca
781 gaaccctcag ctctggtgcg ggcagatccc tgccatttag gtgcctaagc aaaaggacag
841 gctgtccaag gtagaaactg tacatagccg gtgaccgaat gcgacctttg ccagccagag
901 ctgctgccag agctgcgttc cctgcagtgg aggtggactg gacacccacg tgcagcgggt
961 ttggctcatt tgaaaatgag ggtccgtggt agctgtgcgt tttgctatca ttgctaagag
1021 attcccgctg attgggctca gtgccagctg ttattctgct tccactgtgt tggggagagg
1081 tgttcggttt ccccagcctg ttaatgaaca gccatacgtg taaaaaaaaa aaaaaaaaa
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