LOCUS BC032740 3274 bp mRNA linear HUM 24-MAR-2004 DEFINITION Homo sapiens RAB5B, member RAS oncogene family, mRNA (cDNA clone MGC:45320 IMAGE:5538490), complete cds. ACCESSION BC032740 VERSION BC032740.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3274) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 3274) AUTHORS Strausberg,R. TITLE Direct Submission JOURNAL Submitted (06-JUN-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Cancer Genomics Office, National Cancer Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC/DCTD/DTP cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 69 Row: l Column: 24 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 4506370. FEATURES Location/Qualifiers source 1..3274 /db_xref="H-InvDB:HIT000259047" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:45320 IMAGE:5538490" /tissue_type="Skin, melanotic melanoma." /clone_lib="NIH_MGC_72" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..3274 /gene="RAB5B" /db_xref="GeneID:5869" /db_xref="MIM:179514" CDS 129..776 /gene="RAB5B" /codon_start=1 /product="RAB5B protein" /protein_id="AAH32740.1" /db_xref="GeneID:5869" /db_xref="MIM:179514" /translation="MTSRSTARPNGQPQASKICQFKLVLLGESAVGKSSLVLRFVKGQ FHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDI TNQETFARAKTWVKELQRQASPSIVIALAGNKADLANKRMVEYEEAQAYADDNSLLFM ETSAKTAMNVNDLFLAIAKKLPKSEPQNLGGAAGRSRGVDLHEQSQQNKSQCCSN" misc_feature 192..677 /gene="RAB5B" /note="Ras; Region: Ras family. Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. The high cutoff is so high to avoid overlaps with related families" /db_xref="CDD:pfam00071" BASE COUNT 778 a 853 c 726 g 917 t ORIGIN 1 ccacgcgtcc ggtgcacata tagcccaccc tcgaaggagt gttgaagcct ggaaatcccc 61 tccccttccc cctcccccct ttacagtatc cccctccctc caccctttcc cattctgata 121 atctggccat gactagcaga agcacagcta ggcccaatgg gcaaccccag gccagcaaaa 181 tttgccagtt caaattggtc ctgctgggag aatctgcagt gggaaagtca agcctggtat 241 tacgttttgt caaagggcag ttccatgagt accaggagag caccattgga gcggccttcc 301 tcacccagtc cgtttgtcta gatgacacaa cagtgaagtt tgagatctgg gacacagctg 361 ggcaggagcg atatcacagc ttagccccca tgtactacag gggtgcccaa gctgcaatcg 421 tggtttacga cattactaat caggaaacct ttgcccgagc aaagacatgg gtgaaggaac 481 tacagcgaca ggccagtcct agcatcgtta ttgccctggc agggaacaaa gctgacctgg 541 ccaacaaacg tatggtggag tatgaagagg cccaggcata tgcagatgac aacagcttat 601 tgttcatgga gacttcagcc aagacagcta tgaacgtgaa tgatctcttc ctggcaatag 661 ctaagaagtt gccaaagagt gaaccccaga atctgggagg tgcagcaggc cgaagccggg 721 gtgtggatct ccatgaacag tcccagcaga acaagagcca gtgttgtagc aactgagggg 781 gtggctagca gcaaacaagt atggagctag cacaagagct aagaaataac ctccatccct 841 acccctcagc acacaacccc tacggtaaca gcacactgag ccctggctcc caagggctgc 901 ctcctgacag ctccgtcatg gcacttttta acgcttcagc aacaaacacc aggcagctgt 961 tgccactggc ctcctacccc ctactctggg gcttgggggt caactccccc caggacttac 1021 cttccaaaac aaactttctt cactttgtat tataggtaca agacagcgac ttacgtatct 1081 tttctcctcc tccctagtgt tcctccccat tttttcagaa aacacttctg actcctgtcc 1141 cttccccttc tgcttttggt cagtccctgt tcttgagcct cttttctcct ctccccagga 1201 tgcagaaagt ggtgaaccca ggaactgagg aaggaggttt ccagttcatt tacattaagg 1261 gccctggggg agaataaagc tcagagcagg agggagtaag gaaacatttc ctttttgttt 1321 ttatttggtt ggagtttctc atatttgaaa acattgcggt atccatgatt tggccttgtg 1381 gagggtgttc ctaggtagag gtgagaatgg ggaggcaaga tctcaggcac caggcaggag 1441 gtgccttgta agctaactgg gcggaggtgg aggtgcagtg tcaactgtgg ctctgtaact 1501 cttcaaaggc ccagtttccc ctcacgcagc ctcttaggta gcgtttcccc taatcgtggg 1561 ggttggaccc cagagtcttc caaagaattt tcactggttg cctgcatctt tggctctgct 1621 gtgatctgat tggaggaggg acagtttctg gtacccatcc tctgatttat acatatgcat 1681 tttttcccct ctggccttta gatggcctca gccccagcca ccatataccc ctgcagtttg 1741 cactttaatt gatggtagtt cagttggggt acttgtttta tggaagtttt gattgattta 1801 cttgccctcc caccttcttt ttaattcaat gaaatctgag gttaatgcga ggttcgagga 1861 gaggttatag ataaaactac cagtggcagc tactcaagtc ctatctccac tgttagcttc 1921 ctccaactct aattattaac ctatattctt gccaagctaa ctattgacta taggtttgcc 1981 tttcctggag aattaattga gcaattgagg agtgtctcag gatagcacag gccaaggtag 2041 gggagtaaaa aggaggtcag gcaaaaggga ggagttttct gtcctttccc aggtttcaca 2101 ctcaatttga tatccattac catgtctttt ctacttcctt gtaaataggt atgatcttta 2161 ttcccactgt acagtctgtt ctatcctctg cctcccatca ggccctgttt ctttgttcct 2221 ttgttaatat cttgaattta gtccctccat ccttaatccc cccatccctc cccatcatgc 2281 aaccagtggt ttaatccatg taccaatagg ggctagtacc acagaggcct cctgtggtgc 2341 cctcgtatca taccacctgt tcctgtggag agggaatgac cggcactgaa ggtaccttac 2401 aactggctca tattatcaga ggaccttggt cctttctaaa tctctagtct ctcttcatat 2461 ccttcatcag gtgttttaag atgtctctga gaagccatca aggcaaaaga gaactttaag 2521 ttccttgttc cagcccggag ttttgggaaa gaaagaaagg aaaggtcaca gtgacctagg 2581 attggaacct tcctgccctt ttggcttgca gactgccttc tatcccagaa cagctgagaa 2641 atctatgaag ctgagattct gaaggaccca gcttaggttc ttccacttag gcctcaattc 2701 ccttcctttt ccaggggcag ccttagttcc catggccctg aaacacacac atttccccct 2761 tcctttccca gaagccactg gccccccata gcacccagtg catccttttt acaagtggaa 2821 gaactaggat ggctttccaa agtcttctag aaatgaagtt ctttctctgt gcagctttcc 2881 cccttggagc aggagtgaag atgtttcatt atcttgggcc tgggaaacca cttccccagg 2941 cttctccctc cccccacccc cataggaaca ggatttggcc ttagcttctg ggcctatcgg 3001 ctgccttccc tctacttcct accacctctt ctgccttcct ttgagctctg ttgggcttgg 3061 ggatcttagt tttcttttgt ttatttccca gctcattttt ttcttctggt cagttttttt 3121 aagggggggt gttgtggttt tttgtttttg ttttgcttct gagaaagcat ttgcctttct 3181 tcctctccca acataacaat cgtggtaaca gaatgcgact gctgatttac cgatgtattt 3241 aatgtaagta aaaaaaggaa aaaaaaaaaa aaaa //