LOCUS BC032715 1278 bp mRNA linear HUM 25-JAN-2007
DEFINITION Homo sapiens Bardet-Biedl syndrome 9, mRNA (cDNA clone
IMAGE:5519851), complete cds.
ACCESSION BC032715
VERSION BC032715.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1278)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1278)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (06-JUN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 69 Row: h Column: 4
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..1278
/db_xref="H-InvDB:HIT000041688"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5519851"
/tissue_type="Uterus, leiomyosarcoma"
/clone_lib="NIH_MGC_71"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1278
/gene="BBS9"
/gene_synonym="B1"
/gene_synonym="C18"
/gene_synonym="D1"
/gene_synonym="PTHB1"
/db_xref="GeneID:27241"
/db_xref="HGNC:HGNC:30000"
/db_xref="MIM:607968"
CDS 71..1003
/gene="BBS9"
/gene_synonym="B1"
/gene_synonym="C18"
/gene_synonym="D1"
/gene_synonym="PTHB1"
/codon_start=1
/product="BBS9 protein"
/protein_id="AAH32715.1"
/db_xref="GeneID:27241"
/db_xref="HGNC:HGNC:30000"
/db_xref="MIM:607968"
/translation="MGYLRIFSPHPAKTGDGAQAEDLLLEVDLRDPVLQVEVGKFVSG
TEMLHLAVLHSRKLCVYSVSGTLGNVEHGNQCQMKLMYEHNLQRTACNMTYGSFGGVK
GRDLICIQSMDGMLMVFEQESYAFGRFLPGFLLPGPLAYSSRTDSFLTVSSCQQVESY
KYQVLAFATDADKRQETEQQKLGSGKRLVVDWTLNIGEQALDICIVSFNQSASSVFVL
GERNFFCLKDNGQIRFMKKLDWSPSCFLPYCSVSEGTINTLIGNHNNMLHIYQDVTLK
WATQLPHIPVAVRVGCLQFSLWKHLLPRSSTLEK"
BASE COUNT 369 a 222 c 278 g 409 t
ORIGIN
1 ccacgcgtcc ggtctggcta atgttgacaa tagtggaaat ggacaagata aaataattgt
61 gggtagcttt atgggatacc taaggatctt tagcccccat cctgcaaaaa caggagatgg
121 agctcaagcc gaagatttgc ttctagaagt ggatctacga gatccagtac ttcaagtgga
181 agtaggaaag tttgtttcag gtaccgaaat gctacatttg gctgtgttac attctagaaa
241 actttgtgtc tactctgtct caggaacctt gggtaatgtg gaacatggga accaatgtca
301 gatgaaattg atgtatgaac ataatcttca gagaacagcc tgcaatatga cctatggatc
361 atttggtggt gtaaaaggtc gagatttaat ttgcatccag tctatggatg ggatgctgat
421 ggtatttgag caggagagct atgcttttgg aagatttctc cctggctttc ttctgcctgg
481 tcctcttgcc tacagttccc gtacagattc cttccttact gtctcttcct gccaacaagt
541 ggaaagttat aagtaccagg tacttgcttt tgcaacagat gcagataaaa ggcaggagac
601 tgaacagcaa aaacttggtt ctggaaaaag actagttgtg gattggactc taaatattgg
661 agagcaagcc cttgacatat gtattgtctc tttcaatcag tcggcatcct ctgtttttgt
721 tcttggtgag agaaactttt tttgccttaa ggataatgga caaattcgat tcatgaagaa
781 gcttgattgg agcccaagtt gttttctgcc atattgctca gtttctgaag gaacaataaa
841 tactttgatt ggaaatcata ataacatgct gcatatttat caagatgtga cactgaagtg
901 ggccacccaa cttccccaca ttcctgtagc agtaagagtg ggctgtttgc aattttcttt
961 atggaagcat ttgttgcctc gatcttccac tttagaaaaa tgaagtttct ccttttcttt
1021 gggagaggat atatctgaat acttgccttc ttggcattta tacattcaaa gctcagtgct
1081 agattagagc tattatttgc atagtctttt ggtattgccc acttttggca ttaccatatt
1141 atttgacaat tagaaggaat agggaaggaa tattacatga ctgtaaaaga gttggttata
1201 ttttatgttg acttcaaggg ttccatttga actattatgg gcaattaaag agttttacat
1261 ttcaaaaaaa aaaaaaaa
//