LOCUS BC032587 2918 bp mRNA linear HUM 19-MAR-2009 DEFINITION Homo sapiens tubby like protein 3, mRNA (cDNA clone MGC:45295 IMAGE:5501868), complete cds. ACCESSION BC032587 VERSION BC032587.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2918) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2918) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (06-JUN-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 69 Row: g Column: 14 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 42544229 The stop codon of the CDS annotated on this record is located > 55 bases upstream of a splice junction, and therefore the mRNA is predicted to be subject to nonsense-mediated mRNA decay (NMD). FEATURES Location/Qualifiers source 1..2918 /db_xref="H-InvDB:HIT000041619" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:45295 IMAGE:5501868" /tissue_type="Eye, retinoblastoma" /clone_lib="NIH_MGC_67" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..2918 /gene="TULP3" /gene_synonym="TUBL3" /db_xref="GeneID:7289" /db_xref="HGNC:HGNC:12425" /db_xref="MIM:604730" CDS 55..1383 /gene="TULP3" /gene_synonym="TUBL3" /codon_start=1 /product="tubby like protein 3" /protein_id="AAH32587.1" /db_xref="GeneID:7289" /db_xref="HGNC:HGNC:12425" /db_xref="MIM:604730" /translation="MEASRCRLSPSGDSVFHEEMMKMRQAKLDYQRLLLEKRQRKKRL EPFMVQPNPEARLRRAKPRASDEQTPLVNCHTPHSNVILHGIDGPAAVLKPDEVHAPS VSSSVVEEDAENTVDTASKPGLQERLQKHDISESVNFDEETDGISQSACLERPNSASS QNSTDTGTSGSATAAQPADNLLGDIDYLEDFVYSPAPQGVTVRCRIIRDKRGMDRGLF PTYYMYLEKEENQKIFLLAARKRKKSKTANYLISIDPVDLSREGESYVGKLRSNLMGT KFTVYDRGICPMKGRGLVGAAHTRQELAAISYETNVLGFKGPRKMSVIIPGMTLNHKQ IPYQPQNNHDSLLSRWQNRTMENLVELHNKAPVWNSDTQSYVLNFRGRVTQASVKNFQ IVHKNDPDYIVMQFGRVADDVFTLDYNYPLCAVQAFGIGLSSFDSKLACE" BASE COUNT 785 a 738 c 683 g 712 t ORIGIN 1 ccacgcgtcc gggggaagag tgtgtacgtg gtgggggctt cctcggtggc gggcatggag 61 gcttcgcgct gccggctcag tcccagcggc gacagtgtct tccatgaaga aatgatgaag 121 atgcgacagg ctaagctgga ttatcagagg ctactacttg agaagaggca aaggaaaaag 181 cgccttgagc catttatggt gcagcccaat ccagaagcca ggctacgtcg ggcaaagcca 241 agggccagtg atgagcagac tcccttggtg aactgtcata ctccccacag caatgtcatc 301 ttacatggta ttgatggtcc agctgctgtc ctgaaaccag acgaagttca tgctccatca 361 gtaagctcct ctgttgtgga agaagatgct gaaaacaccg tggatactgc ttccaagcca 421 ggacttcagg agcgtctcca aaagcatgat atctctgaaa gtgtgaactt cgatgaggag 481 actgatggaa tatcccagtc agcatgttta gaaagaccca attctgcatc aagccagaat 541 tcaaccgata caggcacttc cggttctgct actgccgccc aaccagctga taacctcctg 601 ggagacatag actacctgga ggactttgtg tatagtcctg cccctcaagg tgtcacagta 661 agatgtcgga taatccggga taaaagggga atggatcggg gtctcttccc cacctactat 721 atgtacttgg aaaaagaaga aaatcagaag atatttcttc ttgcagctag aaagcggaaa 781 aagagcaaaa cagccaacta ccttatctcc attgatccag ttgatttatc tcgtgaagga 841 gaaagttatg tcggcaagct tagatccaac ctcatgggga ccaagtttac agtttatgac 901 cgtggcatct gccccatgaa gggccggggt ttggtaggag cggcccacac ccggcaggag 961 ctggctgcca tctcctatga aacaaacgta cttggattta aaggtcctag gaaaatgtct 1021 gtgatcattc ctggaatgac actgaatcat aagcagatcc cctatcagcc acaaaacaac 1081 catgacagtt tgctctcaag gtggcagaac agaactatgg aaaatctggt tgagctgcac 1141 aacaaggccc ccgtctggaa cagtgacact cagtcctatg tcctcaactt ccgtggccgg 1201 gtcactcagg cgtctgtgaa gaacttccag atagtccaca aaaatgaccc tgattatata 1261 gtcatgcagt ttggacgtgt ggcagatgac gtgttcacac tggattacaa ctacccactt 1321 tgtgcagtac aggcctttgg catcggtctt tctagctttg acagtaagct ggcgtgtgaa 1381 tgagagaaca gtcaggcagg gagcccttct ccccacagag ctttcaggag cagacagtgg 1441 cctccccttc ccctccctgc cccaggactt aaagagcaat agtttgcccc ttttggaatg 1501 atctctgaat atataaaaca cacacacaaa gagcaatagt ttgccccttt tggaacgacc 1561 cctgaatata taaaacacac acacaccccg cgcactctca ctccttttcc aggtttcata 1621 gacttggtga gggatcacag cttagcatgg gtgagagatg atttaaagca cagggagatt 1681 cttgtcacat tggggtctcc aaagctagaa tgggatttca tgtgcttgga aacttgcagt 1741 agaatcaggg actgacatcg cagttcctct cctctcttca ttccctcaca gcagattggc 1801 cggcaccaat cttagtcaag agtggctgtg atcacatttg tgatcaatta tgtgagaatt 1861 ttatataatt gtcttcattt caattaaggc tgaaagcata aactctagag gtgactcagt 1921 caggactgac agtaatgtga taattgcctt cattttcaac ccaggagtgc ctctcacagc 1981 tatatgacta cggatccatt agtgaggagc gacacacaca cctgtaggca tcctgtgcaa 2041 acactttgtc attatcaaga gagatggcag tattgaccat ttagtttagt taaaaaaaaa 2101 aaaaaaaagg tggcaggaga ggctttgggg aggatcagcc agcagacatg agcactgctg 2161 gcccgtgtgg cagagctgtg gactttcttc tcggctccct caaccctggc tcaggcacag 2221 aaggtgtttt gctacgtttt tttgattatt acacccctcc acgtattatg tgactcttac 2281 accagttcac ccttcccaga atgtatccaa accttgagaa tgcaggagct ctgtgagctc 2341 caccgtcagc accattcagc tgcatccctt gtgcacagaa ctgtttgcca gcgttgggtg 2401 ggacacccgt ggcggctgct ccctcagacc tcccttctgt ggactgacct ctcacctccg 2461 cctgttgttc ctgcaccaca tcagataagc atgtgaagga gggccaactg gcagctgcgg 2521 gacccttggc ttgtccccca ccgacaagtc ccacctgctg ggtgaggacg agactgtttc 2581 catctcaggc atgtatccca ccaagtgcct ccctcacagc catgcccaga agcctcacac 2641 ctcgtcacca ccaccacccc ccaccccatc ctgaggcact gcctggcaga taaccctggt 2701 tggccacaga agctattaat acacgacagc atgtggggaa ggacttatgg tgggccaggt 2761 ggacctcatc ctgcttcttc ctccctctgg tttaaagaga tatataaact aatttcacat 2821 aatttgtgtg tgcaggtgat tggtttttac ataagtccta tttatacctt ttatatgtta 2881 cagaaataaa agttaattta tataaaaaaa aaaaaaaa //