LOCUS BC032499 1956 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens globoside alpha-1,3-N-acetylgalactosaminyltransferase
1, mRNA (cDNA clone MGC:44848 IMAGE:5223113), complete cds.
ACCESSION BC032499
VERSION BC032499.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1956)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1956)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (06-JUN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 69 Row: a Column: 13
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 32484984.
FEATURES Location/Qualifiers
source 1..1956
/db_xref="H-InvDB:HIT000041570"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:44848 IMAGE:5223113"
/tissue_type="Pancreas, Spleen, adult pooled"
/clone_lib="NIH_MGC_120"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1956
/gene="GBGT1"
/gene_synonym="A3GALNT"
/gene_synonym="FS"
/gene_synonym="MGC44848"
/gene_synonym="RP11-326L24.6"
/gene_synonym="UNQ2513"
/db_xref="GeneID:26301"
/db_xref="HGNC:HGNC:20460"
/db_xref="MIM:606074"
CDS 265..1308
/gene="GBGT1"
/gene_synonym="A3GALNT"
/gene_synonym="FS"
/gene_synonym="MGC44848"
/gene_synonym="RP11-326L24.6"
/gene_synonym="UNQ2513"
/codon_start=1
/product="globoside
alpha-1,3-N-acetylgalactosaminyltransferase 1"
/protein_id="AAH32499.1"
/db_xref="GeneID:26301"
/db_xref="HGNC:HGNC:20460"
/db_xref="MIM:606074"
/translation="MHRRRLALGLGFCLLAGTSFSVLWVYLENWLPVSYVPYYLPCPE
IFNMKLHYKREKPLQPVVWSQYPQPKLLEHRPTQLLTLTPWLAPIVSEGTFNPELLQH
IYQPLNLTIGVTVFAVGKYTHFIQSFLESAEEFFMRGYRVHYYIFTDNPAAVPGVPLG
PHRLLSSIPIQGHSHWEETSMRRMETISQHIAKRAHREVDYLFCLDVDMVFRNPWGPE
TLGDLVAAIHPSYYAVPRQQFPYERRRVSTAFVADSEGDFYYGGAVFGGQVARVYEFT
RGCHMAILADKANGIMAAWREESHLNRHFISNKPSKVLSPEYLWDDRKPQPPSLKLIR
FSTLDKDISCLRS"
BASE COUNT 401 a 614 c 558 g 383 t
ORIGIN
1 cgcggccccg ctgcctgccc tgctccaggc tccacctgcg ccgccgatcg cccgggtatc
61 gcgggggccc aggccagctg agtccgtttt ccgcgccggg gtggcgcccc tccaaccgtc
121 ctaacgccgg gccggcagca aggagtgttc ctgggacctc agagaccagg ctcagagcct
181 gacatccctg cgaggggaca gcctcatccg cccaggccgg tgggggtctc tacaagtgcc
241 caggctcagg tgcagccccc agcaatgcat cgccggagac tggccctggg tctggggttc
301 tgcctgttgg cgggcacaag cttcagtgtc ctgtgggtgt atcttgagaa ctggctgcca
361 gtctcctatg tcccctatta tctcccctgc ccagagatct tcaacatgaa gctgcactac
421 aagagggaga agccactcca gcccgtggta tggtcacagt accctcagcc caagctgctg
481 gagcacaggc ccacacagct gctgacactc acaccctggt tggcgcccat cgtctccgag
541 ggaaccttca acccagagct tctgcagcac atctaccagc cactgaacct gaccattggg
601 gtcacggtgt ttgccgtggg gaagtacact catttcatcc agtccttcct ggagtcagcc
661 gaggagttct tcatgcgtgg gtaccgggtg cactactaca tcttcactga caaccctgca
721 gccgttcccg gggtcccgct gggtccccac cggcttctca gctccatccc catccagggt
781 cactcccact gggaggagac atccatgcgc cggatggaga ccatcagcca gcacattgct
841 aagagggctc accgggaggt ggactacctc ttctgccttg atgtggacat ggtgtttcgg
901 aacccgtggg gccctgagac cttgggagac ctggtggctg ccattcaccc aagctactac
961 gccgttcccc gccagcagtt cccctatgag cgcaggcgtg tttccactgc ctttgtggca
1021 gacagcgaag gggacttcta ttatggtggg gcagtcttcg gggggcaggt ggccagggta
1081 tatgagttta ctaggggctg ccacatggcc atcctggcgg acaaggccaa tggcatcatg
1141 gctgcctggc gggaggaaag ccacctgaac cgtcacttca tctcaaacaa gccgtccaag
1201 gtgctgtccc ccgagtacct ctgggacgac aggaagcccc agccacccag tctgaagctg
1261 atccgctttt ctacactgga caaggatatc agctgcctga ggagctgacc acggagctgg
1321 gggttgccat ggatggggac ccaaagacct gcagccacca gtgcttcact agcgtgcaga
1381 ccagccctgt cccgcctccc tgtcagtcag gcgaattcaa ccggaaaagg gacgtggaaa
1441 ggccactgtg aactgcagag ggctgtgcac acagtagcac acaggatctc acagtaacgc
1501 ggcatgggaa cagtgagaca gggggagggg aggcgcagtt acaaaggcag ggcccggcag
1561 gcttgccacg ttctgcagcc gtgcctttgc ggggcaggct ctgaagcctc agcccgactc
1621 agagtgcctg aaccctgccg cgccagtccc ccgtttattg catattgccc ttaacgtagc
1681 atttctaata ccctggtgtg aaggcgccct agaccccttt tctctggtca caggggtcct
1741 gggtcctttg atgtctccca accacatgta gccaattcct cactcaggcc cccagagtga
1801 gcctttgaaa tggaacaggt ctaggctccc tcggtttcct gcaccccaaa gtgagccgca
1861 ctctcagggg actagccacc tccttcttaa gagggtttgg ggcagtttat aataaagggg
1921 gcgtgtgctc aaaaaaaaaa aaaaaaaaaa aaaaaa
//