LOCUS BC032386 2412 bp mRNA linear HUM 30-JAN-2008
DEFINITION Homo sapiens integrator complex subunit 6, mRNA (cDNA clone
IMAGE:5176314), complete cds.
ACCESSION BC032386
VERSION BC032386.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2412)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2412)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (06-JUN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 64 Row: f Column: 13
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 11024693
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..2412
/db_xref="H-InvDB:HIT000092629"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5176314"
/tissue_type="Brain, Lung, Testis, adult, pooled whole"
/clone_lib="NIH_MGC_115"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2412
/gene="INTS6"
/gene_synonym="DBI-1"
/gene_synonym="DDX26A"
/gene_synonym="DICE1"
/gene_synonym="DKFZP434B105"
/gene_synonym="HDB"
/gene_synonym="INT6"
/gene_synonym="Notchl2"
/db_xref="GeneID:26512"
/db_xref="HGNC:HGNC:14879"
/db_xref="MIM:604331"
CDS 495..842
/gene="INTS6"
/gene_synonym="DBI-1"
/gene_synonym="DDX26A"
/gene_synonym="DICE1"
/gene_synonym="DKFZP434B105"
/gene_synonym="HDB"
/gene_synonym="INT6"
/gene_synonym="Notchl2"
/codon_start=1
/product="integrator complex subunit 6"
/protein_id="AAH32386.1"
/db_xref="GeneID:26512"
/db_xref="HGNC:HGNC:14879"
/db_xref="MIM:604331"
/translation="MPILLFLIDTSASMNQRSHLGTTYLDTAKGAVETFMKLRARDPA
SRGDRYMLVTFEEPPYAIKAGWKENHATFMNELKNLQAEGLTTLGQSLRTAFDLLNLN
RLVTGIDNYGQVG"
BASE COUNT 689 a 518 c 498 g 707 t
ORIGIN
1 ggctgagaaa gtggtgacac cgccggggtg cggagggagt ccctgaaact tctcccaaca
61 gccccagggc caatcttccc tcagcccact cccctcttcg ccagctccca ggtccccact
121 cctgtaccgg gggtggggtg gggagccagg cccgtctccc gctgggacac acacaggggc
181 cgggagcggg gacgggaccc ccgaggcggg ggggacgaac cgacagacag acggctgggc
241 gcccgcccca gcgggcaggc aggcaggagg aggcggaggc gggggtacga cggggagcac
301 tgggtctggg gagtttcctc tcaactatcg ggggagaaac tccccgcagc cggaggaaag
361 acccagacag tgttttcctc ccgggggccg tgctcccccg ccccgcgtag cggcggtcgc
421 cgccaccggc gcctccacct ctaccatctc ctctttctcc accacctcgg gccccggtgt
481 ccccggccag cactatgccc atcttactgt tcctgataga cacgtctgcc tctatgaacc
541 agcgcagcca tctgggcacc acctacctgg acacggccaa aggcgcggta gagaccttca
601 tgaagctccg tgcccgggac cctgccagca gaggagacag gtatatgctg gtcactttcg
661 aagagccgcc ctatgctatc aaggctggat ggaaagaaaa ccatgcaacg tttatgaatg
721 aattgaaaaa ccttcaggct gaaggactta cgactcttgg ccaatcccta aggacagctt
781 ttgatttatt aaatttaaat agattagtaa ctggcataga caactatggg caggtaggtt
841 gaataataag gtggcaaaat agttgatttt tcattttgtg gaaaaacaca gtccagtcca
901 aaaactacat aacatgaaat gcaagtataa aacattccaa attaaaatag aatatgcaca
961 ttgttcaaag gcaaaactct taccctacta tatatatttt acatccctca ttttttcccc
1021 ctctaaaatg cattggtatt caggattaga atctgaatct tttgctataa agttgacata
1081 cattggtttt aatcccttga aagttcagta aagacctaaa aggaaaagca tcctaccaca
1141 ccacactcat gttgtatgtg caactattat agtggcttag agacactagt tcgtgttctt
1201 cgtttctata ttagtaaaga tgttagagga aattaatctg tttgttgcat cagggtttaa
1261 tgtgaccatg ttgtataact attctgaaag gtaagaagtt tttcactgga gtacagtcac
1321 tggctgagaa catttaagtt ttcttttgaa gcatacacag ttaacaacta ttgcaggaag
1381 aactctgaat taaatttcag gcccagagtt ttgatttaaa ctccaaaccc ttggaaaaaa
1441 agactgctgg aaaatatgaa agaacccttc gtttcttaac ccccacaagt ccttttattg
1501 cacttacttt catgtatttg aggatgagag gagctttaaa tcaacaataa ttcactaagg
1561 aataatgcaa ggtggtctat tgtaacattt tatgatatta ttgccctgga aataaaagat
1621 actgaacaat gtataatgtt acatgtaaca aaggaatatt atttccaagg agctcagttc
1681 ttatgttgta gtgaaaagca ctattcctaa ttatatattg ggtatatgtt gtattttccc
1741 aagtcccaca gtccctagtt ttgtgagttt cgtacatttc agggaaattc tttctgtgac
1801 tacaactttt atttgcttcc tattgaagga aattgacttg tttctgtttt aggaaatttt
1861 aagcttctta gggataactt cagtgcttaa gtgtctttgg aaataactga atttagttct
1921 ataacattta aaatgtacac tgaaattcag agtgagctta ccaaattgaa cttccaacgt
1981 ttagttaggt aaatatgtac tttcttacca cattaatact tttatgtttt tcccatctct
2041 gctgctttta ttttgcaact tttaataatt taggtagatt tgcaatgaac tttttggttt
2101 gtttctgtaa aatagtagtg gatttccttc tcttttatat tcctttgtga tatgtagtgc
2161 aacacagtct tactgcttaa ggttttcatc cttacctctt tgagttcaaa gagatattta
2221 aaacttgcca ttatttggtt acctttattt ggttgtcatg ttgttagtgt atggcagaac
2281 tattagtttc ctctttttct gcatcacatt tcataagtgg tcaaggcatt tggacatatt
2341 cacctcctat tacctattaa aaatacttct taaaaaaaaa aaaaaaaaaa aaaaaaaaaa
2401 aaaaaaaaaa aa
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