LOCUS BC032350 1289 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens major histocompatibility complex, class II, DR alpha,
mRNA (cDNA clone MGC:40279 IMAGE:5214156), complete cds.
ACCESSION BC032350
VERSION BC032350.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1289)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1289)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (06-JUN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 64 Row: k Column: 24
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 52426773.
FEATURES Location/Qualifiers
source 1..1289
/db_xref="H-InvDB:HIT000041505"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:40279 IMAGE:5214156"
/tissue_type="Blood, adult leukocytes"
/clone_lib="NIH_MGC_118"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1289
/gene="HLA-DRA"
/db_xref="GeneID:3122"
/db_xref="HGNC:HGNC:4947"
/db_xref="MIM:142860"
CDS 41..805
/gene="HLA-DRA"
/codon_start=1
/product="major histocompatibility complex, class II, DR
alpha"
/protein_id="AAH32350.1"
/db_xref="GeneID:3122"
/db_xref="HGNC:HGNC:4947"
/db_xref="MIM:142860"
/translation="MAISGVPVLGFFIIAVLMSAQESWAIKEEHVIIQAEFYLNPDQS
GEFMFDFDGDEIFHVDMAKKETVWRLEEFGRFASFEAQGALANIAVDKANLEIMTKRS
NYTPITNVPPEVTVLTNSPVELREPNVLICFIDKFTPPVVNVTWLRNGKPVTTGVSET
VFLPREDHLFRKFHYLPFLPSTEDVYDCRVEHWGLDEPLLKHWEFDAPSPLPETTENV
VCALGLTVGLVGIIIGTIFIIKGLRKSNAAERRGPL"
BASE COUNT 393 a 295 c 278 g 323 t
ORIGIN
1 ccgagctcta ctgactccca acagagcgcc caagaagaaa atggccataa gtggagtccc
61 tgtgctagga tttttcatca tagctgtgct gatgagcgct caggaatcat gggctatcaa
121 agaagaacat gtgatcatcc aggccgagtt ctatctgaat cctgaccaat caggcgagtt
181 tatgtttgac tttgatggtg atgagatttt ccatgtggat atggcaaaga aggagacggt
241 ctggcggctt gaagaatttg gacgatttgc cagctttgag gctcaaggtg cattggccaa
301 catagctgtg gacaaagcca acctggaaat catgacaaag cgctccaact atactccgat
361 caccaatgta cctccagagg taactgtgct cacgaacagc cctgtggaac tgagagagcc
421 caacgtcctc atctgtttca tagacaagtt caccccacca gtggtcaatg tcacgtggct
481 tcgaaatgga aaacctgtca ccacaggagt gtcagagaca gtcttcctgc ccagggaaga
541 ccaccttttc cgcaagttcc actatctccc cttcctgccc tcaactgagg acgtttacga
601 ctgcagggtg gagcactggg gcttggatga gcctcttctc aagcactggg agtttgatgc
661 tccaagccct ctcccagaga ctacagagaa cgtggtgtgt gccctgggcc tgactgtggg
721 tctggtgggc atcattattg ggaccatctt catcatcaag ggattgcgca aaagcaatgc
781 agcagaacgc agggggcctc tgtaaggcac atggaggtga tggtgtttct tagagagaag
841 atcactgaag aaacttctgc tttaatggct ttacaaagct ggcaatatta caatccttga
901 cctcagtgaa agcagtcatc ttcagcattt tccagcccta tagccacccc aagtgtggat
961 atgcctcttc gattgctccg tactctaaca tctagctggc ttccctgtct attgcctttt
1021 cctgtatcta ttttcctcta tttcctatca ttttattatc accatgcaat gcctctggaa
1081 taaaacatac aggagtctgt ctctgctatg gaatgcccca tggggcatct cttgtgtact
1141 tattgtttaa ggtttcctca aactgtgatt tttctgaaca caataaacta ttttgatgaa
1201 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
1261 aaaaaaaaaa aaaaaaaaaa aaaaaaaaa
//