LOCUS BC032349 2728 bp mRNA linear HUM 06-OCT-2006
DEFINITION Homo sapiens raftlin, lipid raft linker 1, mRNA (cDNA clone
IMAGE:5214070), partial cds.
ACCESSION BC032349
VERSION BC032349.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2728)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2728)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (06-JUN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 64 Row: k Column: 22.
FEATURES Location/Qualifiers
source 1..2728
/db_xref="H-InvDB:HIT000092610"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5214070"
/tissue_type="Blood, adult leukocytes"
/clone_lib="NIH_MGC_118"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene <1..2728
/gene="RFTN1"
/gene_synonym="FLJ23866"
/gene_synonym="KIAA0084"
/gene_synonym="MIG2"
/gene_synonym="PIB10"
/gene_synonym="PIG9"
/gene_synonym="RAFTLIN"
/db_xref="GeneID:23180"
/db_xref="HGNC:HGNC:30278"
CDS <1..1692
/gene="RFTN1"
/gene_synonym="FLJ23866"
/gene_synonym="KIAA0084"
/gene_synonym="MIG2"
/gene_synonym="PIB10"
/gene_synonym="PIG9"
/gene_synonym="RAFTLIN"
/codon_start=1
/product="RFTN1 protein"
/protein_id="AAH32349.1"
/db_xref="GeneID:23180"
/db_xref="HGNC:HGNC:30278"
/translation="HGRKAVLPLRPPWPLWGSLQLMYCDGAVDLDAAAELPGSSAVRL
ASLRDLPAQLLELYQQGFSLAALHPFVQPTHEREKTPLEHIFRAILIKKTDRSQKTDL
HNEGYILELDCCSSLDHPTDQKLIPEFIKKIQEAASQGLKFVGVIPQYHSSVNSAGSS
APVSTANSTEDARDAKNARGDHASLENEKPGTGDVCSAPAGRNQSPEPSSGPRGEVPL
AKQPSSPSGEGDGGELSPQGVSKTLDGPESNPLEVHEEPLSGKMEIFTLFNKPKSHQK
CRQYYPVTIPLHVSKNGQTVSGLDANWLEHMSDHFRKGGMLVNAVFYLGIVNDSLHGL
TDGVFIFEAVSTEDSKTIQGYDAIVVEQWTVLEGVEVQTDYVPLLNSLAAYGWQLTCV
LPTPVVKTTSEGSVSTKQIVFLQRPCLPQKIKKKESKFQWRFSREEMHNRQMRKSKGK
LSARDKQQAEENEKNLEDQSSKAGDMGNCVSGQQQEGGVSEEMKGPVQEDKGEQLSPG
GLLCGVGVEGEAVQNGPASHSRALVGICTGHSNPGEDARDGDAEEVRELGTVEEN"
BASE COUNT 716 a 682 c 724 g 606 t
ORIGIN
1 catggcagaa aggctgttct gcccctgcgc cctccctggc ctctctgggg atccctgcag
61 ctgatgtatt gtgatggagc agtggacttg gatgctgctg cggagctccc tgggtcctca
121 gcagtgaggc tggcctccct gcgtgacctg cccgcccagc tcctggagct gtaccagcag
181 ggcttctcgc tggcggccct gcaccccttc gtgcagccca cccatgagcg ggagaagacg
241 cccctggagc acatctttag agccatcctg atcaagaaaa ccgacagatc tcagaaaact
301 gatcttcaca atgaaggcta catcttggaa ttagattgct gttcctcctt agaccacccg
361 acagaccaga aactcatccc agagttcatt aagaagatcc aggaggctgc aagccagggc
421 ctgaaattcg ttggtgttat acctcagtac cattcctctg tgaactcggc aggcagcagt
481 gctccggtgt ctactgccaa cagcaccgag gatgccagag atgcaaaaaa cgcacgtggg
541 gatcacgcgt cactggagaa tgagaaaccg gggactgggg atgtgtgcag tgctccggct
601 gggagaaacc aaagcccaga gcccagctca ggccccagag gggaggtgcc cctcgccaag
661 cagcccagct caccctccgg agagggagat ggtggagaac tttcaccaca gggggtgagc
721 aagacactgg atggaccgga gagcaacccc ttggaggtgc atgaagagcc actctcaggg
781 aaaatggaga tcttcaccct tttcaacaaa ccgaagagcc atcagaagtg ccggcaatac
841 taccctgtca ccattcctct ccatgtctcc aagaatggcc agacagtgag cggtttggac
901 gccaactggt tagagcacat gagcgaccac ttccggaaag gaggcatgct ggtgaacgca
961 gtcttctacc ttggaatagt gaatgattcc ttacatggct tgacagatgg agtattcatc
1021 tttgaagctg tttccacaga agatagcaaa accatacagg gctatgatgc tattgtggtt
1081 gaacaatgga cagtcctgga aggtgtcgaa gtgcagacag actacgtgcc cctgctgaac
1141 tcgctggcgg cctatggctg gcagctcacc tgtgtgctac caactcccgt cgtcaagact
1201 accagcgagg ggagtgtatc caccaagcag attgtctttc ttcagagacc gtgtctacct
1261 cagaaaatca agaagaagga atcgaagttt cagtggcgat tctccagaga agaaatgcac
1321 aacaggcaga tgaggaaatc aaaaggtaaa ctcagtgcca gagacaaaca acaagcagaa
1381 gaaaatgaga agaacttaga agaccagtct tccaaagctg gagacatggg aaactgtgtt
1441 tcgggacagc agcaggaggg tggagtctcc gaggagatga agggccctgt ccaagaggac
1501 aagggagaac agctgtcccc tggtggcctg ctgtgtgggg tgggtgtgga gggtgaggct
1561 gtgcagaatg gtcctgccag ccacagcagg gccctggtgg ggatttgcac tgggcactcc
1621 aatcctggag aggatgccag ggacggggat gctgaggaag tcagagagct tggtacggtt
1681 gaagaaaact gagtcttggg caatttgtgc taaaactagg tgagttgcca aacccaaggc
1741 atcttaccaa cagctggttt gggggctggt ttccctggtg ttgtgtgtta cctacccttt
1801 ggcttggctt gacctctcct tgtgagctca cctgagccct cccagggcca ggttcctgac
1861 agtgttggtt tttgcacatc cactggaaag gtgtcattaa tgacccagtg ttagaatgca
1921 agaggtcagg ttattctagc cctcatggct gaaggcccag tcctggctcc accactcctc
1981 cagccagagg gtctggacca tccagtgcct gtcctcgcca cagggcctcc agggagcatt
2041 cgggtcaaat ccatggacac cctgggcaac aaaccaaggc tgctgttcat cccacatcgt
2101 gtggggcagt gtccatcccc tgcagctact tggtgactta acaactccag gagccctgtc
2161 agctgccctc ctccacctaa accccttcga ctcttctgct ttgacaaaga aaatgacatt
2221 ggggagggga ggtgctccgc ctcccagctt ttctcaaaat agtcctatag atactggtaa
2281 tctggaaatg aagaagtaat tctgtctctg cacctactct tgcagaatgt tcaaggaagt
2341 attctgtgtt agtattaatg ccaaaaagtt gtttttaaag gttttgtact cagcacatca
2401 tacaaaccac attacttctg tcacttcagg gcatcgggac tggctggcgc ccttgttatg
2461 tgctatttta atcagtgtaa cattggtcaa gttgttaccc atgtatgctg tgtttatcat
2521 gtgtatatcg tccagaaagt attaaggctt taggtagatg caactggcga accttggaga
2581 gggaatgctg attgtcttga ccaaacccac agcctgtctc ttctcttgtt tagttactta
2641 cggcaataaa tcatctatga gttagtgcac cgtgaaaaaa aaaaaaaaaa aaaaaaaaaa
2701 aaaaaaaaaa aaaaaaaaaa aaaaaaaa
//