LOCUS BC032301 3325 bp mRNA linear HUM 26-JUN-2007
DEFINITION Homo sapiens ubiquitin protein ligase E3B, mRNA (cDNA clone
IMAGE:5167597), partial cds.
ACCESSION BC032301
VERSION BC032301.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3325)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3325)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (06-JUN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 64 Row: e Column: 11
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 35493951.
FEATURES Location/Qualifiers
source 1..3325
/db_xref="H-InvDB:HIT000092596"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5167597"
/tissue_type="Brain, adult medulla"
/clone_lib="NIH_MGC_119"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..>3325
/gene="UBE3B"
/gene_synonym="DKFZp586K2123"
/gene_synonym="DKFZp686A1051"
/db_xref="GeneID:89910"
/db_xref="HGNC:HGNC:13478"
/db_xref="MIM:608047"
CDS 248..>3325
/gene="UBE3B"
/gene_synonym="DKFZp586K2123"
/gene_synonym="DKFZp686A1051"
/codon_start=1
/product="UBE3B protein"
/protein_id="AAH32301.1"
/db_xref="GeneID:89910"
/db_xref="HGNC:HGNC:13478"
/db_xref="MIM:608047"
/translation="MFTLSQTSRAWFIDRARQAREERLVQKERERAAVVIQAHVRSFL
CRSRLQRDIRREIDDFFKADDPESTKRSALCIFKIARKLLFLFRIKEDNERFEKLCRS
ILSSMDAENEPKVWYVSLACSKDLTLLWIQQIKNILWYCCDFLKQLKPEILQDSRLIT
LYLTMLVTFTDTSTWKILRGKGESLRPAMNHICANIMGHLNQHGFYSVLQILLTRGLA
RPRPCLSKGTLTAAFSLALRPVIAAQFSDNLIRPFLIHIMSVPALVTHLSTVTPERLT
VLESHDMLRKFIIFLRDQDRCRDVCESLEGCHTLCLMGNLLHLGSLSPRVLEEETDGF
VSLLTQTLCYCRKYVSQKKSNLTHWHPVLGWFSQSVDYGLNESMHLITKQLQFLWGVP
LIRIFFCDILSKKLLESQEPAHAQPASPQNVLPVKSLLKRAFQKSASVRNILRPVGGK
RVDSAEVQKVCNICVLYQTSLTTLTQIRLQILTGLTYLDDLLPKLWAFICELGPHGGL
KLFLECLNNDTEESKQLLAMLMLFCDCSRHLITILDDIEVYEEQISFKLEELVTISSF
LNSFVFKMIWDGIVENAKGETLELFQSVHGWLMVLYERDCRRRFTPEDHWLRKDLKPS
VLFQELDRDRKRAQLILQYIPHVIPHKNRVLLFRTMVTKEKEKLGLVETSSASPHVTH
ITIRRSRMLEDGYEQLRQLSQHAMKGVIRVKFVNDLGVDEAGIDQDGVFKEFLEEIIK
RVFDPALNLFKTTSGDERLYPSPTSYIHENYLQLFEFVGKMLGKAVYEGIVVDVPFAS
FFLSQLLGHHHSVFYSSVDELPSLDSEFYKNLTSIKRYDGDITDLGLTLSYDEDVMGQ
LVCHELIPGGKTIPVTNENKISYIHLMAHFRMHTQIKNQTAALISGFRSIIKPEWIRM
FSTPELQRLISGDNAEIDLEDLKKHTVYYGGFHGSHRVIIWLWDILASDFTPDERAMF
LKFVTSCSRPPLLGFAYLKPPFSIRCVEVSDDQDTGDTLGSVLRGFFTIRKREP"
BASE COUNT 806 a 856 c 838 g 825 t
ORIGIN
1 ggcaagatgg cggtagtgcg tcggctgctg ccccgggtct ggcagaactc gggtgttttg
61 ggctgagaca gtggcagctg cggccccgac cccaagtgcg gggacctccg gcgaataaag
121 aaaaaataac aagcttttct gaagtgagaa gctgttctca gccacgagtc ctgtgcaaga
181 tcactaatga ttacctggca tttctgcgac acaggcaggt cctcagggtt tgtgcaagtt
241 tgcaaacatg ttcaccctgt ctcagacctc gagagcatgg ttcatcgata gagcccgtca
301 ggcacgagaa gaaaggcttg tgcagaagga acgggagcgg gcagctgttg tgatccaggc
361 ccatgtccgg agttttctct gtcggagtcg actgcagaga gatatcagga gagagattga
421 tgactttttt aaagcagatg accctgagtc cactaaaaga agtgcacttt gtattttcaa
481 gattgccagg aaactgctgt tcctattcag aatcaaagag gataatgaga gatttgagaa
541 gttgtgtcgc agcatcctga gcagcatgga tgctgagaat gagcctaagg tgtggtatgt
601 gtccctggct tgttctaagg acctcaccct cctttggatt caacagatca agaacatttt
661 gtggtactgc tgtgattttc tcaagcagct caagcctgaa atcctgcagg actcccgact
721 catcaccctg tacctcacga tgcttgtcac cttcacagac acttcaacgt ggaaaattct
781 tcggggaaaa ggtgaaagtc ttcgaccagc gatgaaccac atttgtgcaa atataatggg
841 acatctcaac cagcatggat tttattctgt gctgcagata ttgttaaccc gtggcctggc
901 aagaccccgt ccttgtctat ccaaaggcac tttaacagca gctttttctc tagcgttacg
961 ccctgtgatt gctgcacagt tctcagacaa tctgattcgg ccgttcctca tccacatcat
1021 gtctgtgcct gctctggtga ctcatctcag cacagtgacc cctgagcgcc tcactgtttt
1081 agaatcccat gacatgcttc gtaaattcat catattttta agagaccaag atcgatgccg
1141 tgatgtatgt gaaagtttag aaggatgcca tacgctttgt ctaatgggca acctcctaca
1201 cttgggctcc ctcagcccca gagtgttaga ggaggagaca gatgggttcg tgagtttgct
1261 cacccagacg ctgtgctact gtcggaagta tgtgtctcag aagaagtcca acctgaccca
1321 ctggcatcct gtccttggct ggttctccca atctgtggat tatggcctta acgagtcaat
1381 gcacttgatc accaaacagc tgcagttctt gtggggggtg cctctgatcc ggatcttctt
1441 ctgtgacatc ctgagcaaga agctactgga gagccaggag ccagcccacg cacagccagc
1501 atcccctcag aatgtgctcc cagtgaagag tctcctaaag cgtgcttttc aaaagtcggc
1561 atcagtccgg aatattctca ggcctgtcgg gggtaaacgg gtcgactctg cagaagtcca
1621 gaaggtttgc aacatctgtg tcctctacca gacctcgctg acaactctca cacagattcg
1681 gctgcagata ctcacaggtc tcacttacct tgatgacctg cttcccaaac tgtgggcatt
1741 tatctgtgag ctcgggcccc acggagggtt aaagctcttc ttggaatgcc tgaacaatga
1801 cactgaagag tccaagcaac tcttggccat gctgatgctg ttctgtgact gttcgcggca
1861 cctcatcaca atccttgatg acattgaagt ttatgaagaa cagatttcat tcaaactgga
1921 agagctggtc actatctcct ctttcctgaa ttcttttgtg tttaagatga tctgggatgg
1981 aattgtagag aacgccaagg gtgagacctt ggagctgttc cagtctgtcc acgggtggct
2041 tatggtgctg tacgagcggg actgccggcg gcgcttcacc cccgaggacc actggctgcg
2101 aaaggatctc aaacctagcg tgctcttcca agaactcgac agggacagaa aacgggcaca
2161 gttgatcctg cagtacatcc cacatgtcat ccctcacaaa aacagagttc tactgtttcg
2221 aaccatggtt accaaggaga aggagaaact ggggctggtg gaaaccagct ctgcctcccc
2281 gcatgtcact cacatcacca tccgccggtc caggatgctg gaggacggct acgagcagct
2341 taggcagctc tcccagcacg ccatgaaggg ggtcatccgt gtgaagtttg tcaatgacct
2401 cggggtggac gaagcaggga ttgatcaaga cggtgttttt aaggagttct tggaagagat
2461 catcaagaga gtttttgacc cagcactcaa tctgttcaag acaaccagtg gggatgagag
2521 gctgtacccc tcacccacat cctacatcca tgagaattac ctgcagctct tcgagtttgt
2581 ggggaagatg ctggggaagg ctgtgtatga gggaattgtg gtggacgtgc catttgcatc
2641 cttcttcctg agccaactgc ttgggcacca ccacagcgtc ttctatagct cggtggatga
2701 actgccttct ctggactccg agttctataa aaacctcacc tccatcaagc gctatgatgg
2761 ggacatcact gacctgggcc tgacgctgtc ttacgacgag gacgtcatgg gtcagcttgt
2821 ttgccatgaa ctgattcctg gagggaagac cattcctgtt acaaatgaaa ataaaattag
2881 ctacatccat ctgatggcac attttcgaat gcacactcaa ataaaaaacc aaacagctgc
2941 cctcattagc ggattccgtt ccattatcaa acccgagtgg atccgaatgt tctcaactcc
3001 tgaactgcag cgtctcatct ctggcgacaa tgctgagatt gatctggaag atttaaagaa
3061 gcacacagtc tactacggtg gtttccatgg aagtcacaga gtcatcatct ggctctggga
3121 tattctggcc tccgacttca caccggatga gagagctatg tttctgaagt tcgtgaccag
3181 ctgctccaga cccccgctcc tgggattcgc ctacctcaag cctccattct ccatccgctg
3241 cgtggaggtg tcggacgatc aggacaccgg ggacactctg ggcagcgtcc tccggggctt
3301 cttcaccatc cgcaagcggg agcca
//