LOCUS BC032231 1686 bp mRNA linear HUM 21-OCT-2003
DEFINITION Homo sapiens elastin microfibril interfacer 2, mRNA (cDNA clone
IMAGE:5210850), partial cds.
ACCESSION BC032231
VERSION BC032231.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1686)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1686)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (06-JUN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 49 Row: j Column: 12
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 14042987.
FEATURES Location/Qualifiers
source 1..1686
/db_xref="H-InvDB:HIT000092588"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5210850"
/tissue_type="Blood, adult leukocytes"
/clone_lib="NIH_MGC_118"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene <1..1686
/gene="EMILIN2"
/gene_synonym="EMILIN-2"
/gene_synonym="FLJ33200"
/gene_synonym="FOAP-10"
/db_xref="GeneID:84034"
CDS <1..994
/gene="EMILIN2"
/gene_synonym="EMILIN-2"
/gene_synonym="FLJ33200"
/gene_synonym="FOAP-10"
/codon_start=2
/product="EMILIN2 protein"
/protein_id="AAH32231.1"
/db_xref="GeneID:84034"
/translation="RGALVGAPRSARASCLRGRRPGRRQPCGRCPDPPRSGPGQAGRA
RCARDVAAQTALAPRALALGAGAAGPGWRGAVPRRPAARVSRAAQRQEQELVRLHREQ
ECELQPEPAPPRPSGPATAEDPGRRPVLPQRPPEERPPQPPGSTGVIAETGQAGPPAG
AGAPGYPKSPPVASPGAPVPSLVSFSAGLTQKPFPSDGGVVLFNKVLVNDGDVYNPST
GVFTAPYDGRYLITATLTPERDAYVEAVLSVSNASVAQLHTAGYRREFLEYHRPPGAL
HTCGGPGAFHLIVHLKAGDAVNVVVTGGKLAHTDFDEMYSTFSGVFLYPFLSHL"
misc_feature 554..976
/gene="EMILIN2"
/gene_synonym="EMILIN-2"
/gene_synonym="FLJ33200"
/gene_synonym="FOAP-10"
/note="C1Q; Region: Complement component C1q domain.
Globular domain found in many collagens and eponymously in
complement C1q. When part of full length proteins these
domains form a 'bouquet' due to the multimerization of
heterotrimers. The C1q fold is similar to that of tumour
necrosis factor"
/db_xref="CDD:smart00110"
BASE COUNT 339 a 518 c 518 g 311 t
ORIGIN
1 ccgcggagca ctggttggag cgccgcgaag cgcccgagcc tcttgccttc gcgggcggcg
61 ccctggccgc cggcagcctt gtggccggtg ccccgatccg ccgcgctccg gacccgggca
121 ggcggggcgc gcccgctgcg cgcgggatgt ggcagcccag acggccctgg ccccgcgtgc
181 cctggcgctg ggcgctggcg ctgctggccc tggttggcgc ggggctgtgc cacgccggcc
241 cgcagcccgg gtatcccgcg cggcccagcg ccaggaacaa gaactggtgc gcctacatcg
301 tgaacaagaa tgtgagctgc agcccgagcc cgccccgccg aggcccagcg gccccgcaac
361 cgcagaggac cctgggcgac ggcccgtcct gccccagcgg ccccccgagg agaggccgcc
421 ccagccgcca ggctccaccg gggtcatcgc ggagacgggc caggccgggc cccccgcagg
481 cgcaggcgca ccaggatacc cgaagtcacc tcctgtagct tccccaggag ctccggtgcc
541 ttctctggtg tctttttctg cggggctcac ccagaagcct ttccccagtg atgggggcgt
601 tgtcctcttt aacaaagtgc tggtgaacga cggggatgtt tacaacccca gcaccggggt
661 cttcacggct ccttatgatg ggcgctacct gatcacggcc accctcaccc ccgagagaga
721 cgcctacgtg gaagcagtgc tgtcggtctc caacgccagc gtggcccagc tgcataccgc
781 tgggtacagg agagagttcc tggaatacca ccgccctcca ggagctttgc atacctgcgg
841 gggcccgggg gcattccacc tcatcgtgca cctgaaggcg ggagatgcag tcaacgtcgt
901 ggtgactggg ggcaagctgg ctcacacaga ctttgatgaa atgtactcca catttagtgg
961 ggttttctta tatcctttcc tttcccacct ctaaggtggc tggggagatg tcaggggaaa
1021 gatagatagt tgtaaaaact ctaaagcttt aatatattcg gtttgtatgt aatggaagca
1081 cggggctaga gtttccacat aggccccaac ataaaggcct tccctcgctg ttgaggccac
1141 catgccttac tgcatccagc caggctgcag ggagtgaggc acacggtgaa catggccact
1201 gacttttctg ccactctaac tggacaactg gaagacttgg aaaggcctcc acctgtatct
1261 acactctgag ggccctggac tgggcctgag cttgccacag aggctccgtc tgactgtggg
1321 ctgggaggag ggaggcaggg gagagccggt cacggtggct ggtctttact gcagggcagc
1381 actgtggcca gctgtctgtc tttacactgc atgcagaagt ttaaacactg aagtgccgaa
1441 gtggcccgtg ccgccgcaca gagaccccga ctttagtttg ggctgttgca cgcttggctc
1501 accattgcca cctgggactt aacctgctca ggcgggcctt cgcccagctg caaataggga
1561 tgcgttagag actgttccca aagcttgttg ggctccttaa atggcatgta caatttaagt
1621 gcaaagacag ggagtgtcaa taaagatgga aagccaaaaa aaaaaaaaaa aaaaaaaaaa
1681 aaaaaa
//