LOCUS BC031971 1690 bp mRNA linear HUM 09-JUN-2008
DEFINITION Homo sapiens peptidylprolyl cis/trans isomerase, NIMA-interacting
1, mRNA (cDNA clone IMAGE:4828633), complete cds.
ACCESSION BC031971
VERSION BC031971.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1690)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1690)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (06-JUN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 72 Row: d Column: 4
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..1690
/db_xref="H-InvDB:HIT000092505"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4828633"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..1690
/gene="PIN1"
/gene_synonym="DOD"
/gene_synonym="UBL5"
/db_xref="GeneID:5300"
/db_xref="HGNC:HGNC:8988"
/db_xref="MIM:601052"
CDS 1423..1560
/gene="PIN1"
/gene_synonym="DOD"
/gene_synonym="UBL5"
/codon_start=1
/product="PIN1 protein"
/protein_id="AAH31971.1"
/db_xref="GeneID:5300"
/db_xref="HGNC:HGNC:8988"
/db_xref="MIM:601052"
/translation="MQKPFEDASFALRTGEMSGPVFTDSGIHIILRTECWRQTRGPNC
F"
BASE COUNT 345 a 516 c 492 g 337 t
ORIGIN
1 agcgggtaag cagggctcga gctcgcccct tgggcgcggc ggcagcgctg cctccctccc
61 atggggtcct ggctcttccg cgtcgtcccc ggggtaacgg ccccggcccg ccctgttgtg
121 gggactgcga gcctcaggag ccgccgggaa gcctgaggaa gctgaggcag ggggctgggc
181 gggtgagggt ccggggagtc cggggcgatg gccctggccc tgccggcccg gctgatacct
241 ctcggcctaa tgcacctgac accccggggg acgtctctgc accttgctgg gcccgggggc
301 acccctggga gggagacacc ccagtaccct gcaaagggcg tagggtgttg cccggcctcg
361 ggtccacaac ctacccctgc taacacccct actgtgtaca cctaatgctg agtctgcgac
421 atcgcccgtg acattctgcc agacgatggc ccctgtgctt aggcccgatt taagggttag
481 ccacaatgat aatattgcca gtaacagggc atgtttttct ctgtgtcaag cgctttaagt
541 tctctctgaa ttgccgcaac tctgggagcc agatgagaaa actgaggtgc agggagatta
601 gagcccattg ccaaggtttt agagtgagtc agtagctcag ctgcatttgc acctggaacc
661 cgcgctctcg cccaccctgc tctagccctg gcctgtggct gggacctcca gcataaaccg
721 gatgctctgc ccagctctgg gcccatttct gctgtttctg ctcagttcaa ccctgatggc
781 ttcctttatg ggtgacactc catgtcaccc aggcgaactg tcagcctttg gagtggcacc
841 cagtagggtc tttacttcca gtttcttgtt cacagtcttc actccttcat acccctcact
901 ccctgggtaa catcgggcca ccagtaatgc tggttcctag ctctgcaaca ccatgcacgg
961 tgtagtagct aagagcagag ctttcgggtg tgaagtacct gagtacagtt cctgctttcc
1021 cctgtgtgtg cctggaacag agtaaacact caggaagcgt tacccactgc tgccattccc
1081 agagatgcaa aaggccgagt gtactacttc aaccacatca ctaacgccag ccagtgggag
1141 cggcccagcg gcaacagcag cagtggtggc aaaaacgggc agggggagcc tgccagggtc
1201 cgctgctcgc acctgctggt gaagcacagc cagtcacggc ggccctcgtc ctggcggcag
1261 gagaagatca cccggaccaa ggaggaggcc ctggagctga tcaacggcta catccagaag
1321 atcaagtcgg gagaggagga ctttgagtct ctggcctcac agttcagcga ctgcagctca
1381 gccaaggcca ggggagacct gggtgccttc agcagaggtc agatgcagaa gccatttgaa
1441 gacgcctcgt ttgcgctgcg gacgggggag atgagcgggc ccgtgttcac ggattccggc
1501 atccacatca tcctccgcac tgagtgctgg aggcagactc gagggccgaa ttgtttctag
1561 ttaggccacg ctcctctgtt cagtcgcaaa ggtgaacact catgcggccc agccatgggc
1621 cctctgagca actgtgcagc accctttcac ccccaattaa acccagaacc accgaaaaaa
1681 aaaaaaaaaa
//