LOCUS BC031620 3111 bp mRNA linear HUM 25-OCT-2004
DEFINITION Homo sapiens sorting nexin 19, mRNA (cDNA clone MGC:34355
IMAGE:5172852), complete cds.
ACCESSION BC031620
VERSION BC031620.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3111)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3111)
AUTHORS Director MGC Project.
TITLE Direct Submission
JOURNAL Submitted (06-JUN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 51 Row: i Column: 20
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 7662025.
FEATURES Location/Qualifiers
source 1..3111
/db_xref="H-InvDB:HIT000051034"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:34355 IMAGE:5172852"
/tissue_type="Brain, Lung, Testis, adult, pooled whole"
/clone_lib="NIH_MGC_115"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..3111
/gene="SNX19"
/gene_synonym="CHET8"
/gene_synonym="KIAA0254"
/db_xref="GeneID:399979"
CDS 511..2922
/gene="SNX19"
/gene_synonym="CHET8"
/gene_synonym="KIAA0254"
/codon_start=1
/product="SNX19 protein"
/protein_id="AAH31620.1"
/db_xref="GeneID:399979"
/translation="MKTETVPPFQETPAGSSCHLNNLLSSRKLMAVGVLLGWLLVIHL
LVNVWLLCLLSALLVVLGGWLGSSLAGVASGRLHLERFIPLATCPPCPEAERQLEREI
NRTIQMIIRDFVLSWYRSVSQEPAFEEEMEAAMKGLVQELRRRMSVMDSHAVAQSVLT
LCGCHLQSYIQAKEATAGKNGPVEPSHLWEAYCRATAPHPAVHSPSAEVTYTRGVVNL
LLQGLVPKPHLETRTGRHVVVELITCNVILPLISRLSDPDWIHLVLVGIFSKARDPAP
CPASAPEQPSVPTSLPLIAEVEQLPEGRASPVAAPVFLSYSEPEGSAGPSPEVEEGHE
AVEGDLGGMCEERKVGNNSSHFLQPNLRGPLFLCEDSELESPLSELGKETIMLMTPGS
FLSDRIQDALCALESSQALEPKDGEASEGAEAEEGPGTETETGLPVSTLNSCPEIHID
TADKEIEQGDVTASVTALLEGPEKTCPSRPSCLEKDLTNDVSSLDPTLPPVLLSSSPP
GPLSSATFSFEPLSSPDGPVIIQNLRITGTITAREHSGTGFHPYTLYTVKYETALDGE
NSSGLQQLAYHTVNRRYREFLNLQTRLEEKPDLRKFIKNVKGPKKLFPDLPFGNMDSD
RVEARKSLLESFLKQLCAIPEIANSEEVQEFLALNTDARIAFVKKPFMVSRIDKMVVS
AIVDTLKTAFPRSEPQSPTEELSEAETESKPQTEGKKASKSRLRFSSSKISPALSVTE
AQDKILYCLQEGSVTKLLEMQPTKAPEKDPEQPPKGRVDSCVSDAAVPAQDPSNSDPA
EHAMC"
BASE COUNT 757 a 840 c 852 g 662 t
ORIGIN
1 ccttcacaca ggcccggctg cggagcgcag tcgcccaggt ttacggcggc agagggccga
61 ggctcccgga gaggaccgcg atgagtccac ttcaggtcgg ggctgagtgt gggcgcgcgg
121 ttcccggcgg cgtgtgaccc agtcttcgcc ggccgctgcc cgctgcgtgt gtaagtgtcc
181 gtgggcccca gggccttgca gcgcccgccc cgaggccccg aagaggcctt ccgcctgggg
241 cagtgtgaag gccacagagt tttcctccaa agccacacct cagctggaag gggcgagttg
301 gagggctctg ttagtggtag ccatggggag acgcggagct gcagctgtcg ctttgcagtg
361 cctgtaggac tttgagggcc tggagccccg gttccctgaa cagcacccag atcgccccat
421 atctgagaca cagttcatgc cccccttccc taactctgaa gtaaaatctt gagggctgtc
481 atctggggaa gcaaccttgt ccgttcagcc atgaagacag aaacagtgcc accgttccag
541 gaaactccag ctggatcgag ctgtcacctc aataacctgt tgagtagccg gaagctgatg
601 gctgtggggg tcttgcttgg ctggctcctg gtcatacacc ttctggtcaa cgtgtggctg
661 ctgtgccttc tgtcggcatt gctagtggtg ctgggaggat ggctgggctc cagcctcgct
721 ggagtggctt caggtcgact gcatctggaa cgcttcatcc cgttggccac ctgtcctcca
781 tgccctgagg cagaaaggca gctggaacgg gagatcaacc gcaccatcca gatgattatt
841 cgagattttg tgttatcttg gtaccgttcc gtgagccagg agccagcctt tgaggaagaa
901 atggaggcag ccatgaaagg gttggtccag gagcttcgga gaaggatgag cgtgatggac
961 agtcatgctg ttgcccagag tgttctgact ctctgcggtt gtcacctgca gagctacatt
1021 caggcaaagg aggccactgc agggaagaat ggtccagttg agccttccca cctctgggag
1081 gcttactgcc gggcgactgc cccacatcct gctgtgcaca gccccagtgc tgaagtcacc
1141 tatacgcgtg gcgttgtgaa tttgttgctt caagggctgg tgcccaagcc ccacttggag
1201 actcgtaccg gacgccatgt agtggtcgaa ctcatcacat gcaatgtaat cttaccactg
1261 atcagcaggc tgtcagatcc tgactggatc caccttgtac tcgtgggtat cttttccaag
1321 gccagagatc cagcaccctg cccagccagt gcccccgaac agccctcagt gcccacatct
1381 ctgccactga ttgctgaggt agagcagctt ccagaaggga gagcttctcc agtagcagcc
1441 ccagtattcc taagttacag tgagccagag ggttctgcag gcccctctcc agaggttgaa
1501 gaaggccacg aagctgtaga gggagatttg ggtgggatgt gtgaagaaag aaaagtagga
1561 aacaactcat ctcatttcct acagccaaat cttcgaggtc ccctgttctt atgtgaagac
1621 tcagagctgg agtctccgct gtctgaactg ggcaaagaaa ccatcatgct catgactcca
1681 ggcagctttc tctctgacag gattcaggat gccctgtgtg ccctagagag ttcccaggct
1741 ctggaaccca aagatggtga ggcatctgaa ggagcagagg ctgaggaggg tccagggaca
1801 gaaacagaga caggcctgcc ggtctccaca ctgaattcct gcccagagat ccatattgac
1861 acagcagaca aggagataga acaaggagat gttaccgcct ctgttacagc tttgctggag
1921 gggccagaaa agacctgccc ctcacggccg tcatgcttag agaaggatct caccaatgat
1981 gtgagctccc ttgatcctac tctgccacca gttctgcttt cctcctctcc acctggtcct
2041 ctcagctcag ccaccttcag ctttgagccc ctaagcagtc ccgatggtcc agttatcatc
2101 cagaaccttc gtatcactgg caccattaca gcccgagagc acagtggcac tggattccac
2161 ccatacacac tctatactgt gaagtacgag acagcccttg acggtgaaaa cagcagcggc
2221 ctgcagcagc tggcctacca cactgtgaat cgtcgctatc gggagttctt gaatctgcag
2281 acccgtctgg aggagaaacc agatctacga aagttcatca aaaatgtgaa gggtcctaaa
2341 aagctctttc cagatcttcc atttggaaac atggacagtg acagagtaga agcccgtaag
2401 agcctcctag aatcattcct aaagcaactc tgtgccattc cagagatcgc taacagtgag
2461 gaggtgcagg agttccttgc tctgaacaca gatgctcgta ttgcctttgt caagaaacca
2521 tttatggtct ctagaataga caagatggtg gtgagtgcca ttgtggacac cttgaagaca
2581 gcgtttcctc gctctgaacc ccagagcccc acagaggagc tgagtgaggc cgagaccgaa
2641 agcaagcccc agacagaagg caagaaggct agcaagtcca ggctgaggtt ctcatccagt
2701 aaaatttctc cagcactaag tgtgactgaa gcacaagaca agattcttta ttgtctccag
2761 gaaggcagtg tgacaaagtt actggaaatg cagccaacaa aagccccaga aaaagatcct
2821 gaacaacctc ccaaaggacg tgtggacagt tgcgtgtcag atgcagccgt gccagcccaa
2881 gaccccagca acagcgatcc ggctgagcat gccatgtgtt gaactccagt gttggaggtg
2941 ctgtgttggg gcacagaaat gagtagtaca tagttgccac agcggaatca agcagcagaa
3001 cagggcacaa acacaggaag ttctaatcca gcaggatgag atcatgctga taatattgat
3061 aactcattaa acttattttt ggcatgcttt ggcaaaaaaa aaaaaaaaaa a
//