LOCUS BC031423 1173 bp mRNA linear HUM 26-JUN-2007
DEFINITION Homo sapiens upstream binding transcription factor, RNA polymerase
I, mRNA (cDNA clone IMAGE:4341587), partial cds.
ACCESSION BC031423
VERSION BC031423.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1173)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1173)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (06-JUN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Lou Staudt
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 26 Row: j Column: 14
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 7657670.
FEATURES Location/Qualifiers
source 1..1173
/db_xref="H-InvDB:HIT000092390"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4341587"
/tissue_type="Lymph, lymphoma"
/clone_lib="NIH_MGC_85"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..>1173
/gene="UBTF"
/gene_synonym="NOR-90"
/gene_synonym="UBF"
/db_xref="GeneID:7343"
/db_xref="HGNC:HGNC:12511"
/db_xref="MIM:600673"
CDS 235..>1173
/gene="UBTF"
/gene_synonym="NOR-90"
/gene_synonym="UBF"
/codon_start=1
/product="UBTF protein"
/protein_id="AAH31423.1"
/db_xref="GeneID:7343"
/db_xref="HGNC:HGNC:12511"
/db_xref="MIM:600673"
/translation="MNGEADCPTDLEMAAPKGQDRWSQEDMLTLLECMKNNLPSNDSS
KFKTTESHMDWEKVAFKDFSGDMCKLKWVEISNEVRKFRTLTELILDAQEHVKNPYKG
KKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPEKKKMK
YIQDFQREKQEFERNLARFREDHPDLIQNAKKSDIPEKPKTPQQLWYTHEKKVYLKVR
PDEIMRDYIQKHPELNISEEGITKSTLTKAERQLKDKFDGRPTKPPPNSYSLYCAELM
ANMKDVPSTERMVLCSQQWKLLSQKEKDAYHKKCDQK"
BASE COUNT 352 a 311 c 300 g 210 t
ORIGIN
1 gtaagaggag gggcgcactc ccattcccat agacccctta agtctaataa ggtcatggct
61 gagtctctca gagtgtggac ctgccccctt ctactctggg cggttagaaa gtcgttagtc
121 gttcacctct cagccttcct gagtgggaac tggtatgtct tccaaagggt gaggtggctt
181 tgaccccggg ttgcccggcc agcacgaccg aggaggtggc tggacagctg gaggatgaac
241 ggagaagccg actgccccac agacctggaa atggccgccc ccaaaggcca agaccgttgg
301 tcccaggaag acatgctgac tttgctggaa tgcatgaaga acaaccttcc atccaatgac
361 agctccaagt tcaaaaccac cgaatcacac atggactggg aaaaagtagc atttaaagac
421 ttttctggag acatgtgcaa gctcaaatgg gtggagattt ctaatgaggt gaggaagttc
481 cgtacattga cagaattgat cctcgatgct caggaacatg ttaaaaatcc ttacaaaggc
541 aaaaaactca agaaacaccc agacttccca aagaagcccc tgacccctta tttccgcttc
601 ttcatggaga agcgggccaa gtatgcgaaa ctccaccctg agatgagcaa cctggaccta
661 accaagattc tgtccaagaa atacaaggag cttccggaga agaagaagat gaaatatatt
721 caggacttcc agagagagaa acaggagttc gagcgaaacc tggcccgatt cagggaggat
781 caccccgacc taatccagaa tgccaagaaa tcggacatcc cagagaagcc caaaaccccc
841 cagcagctgt ggtacaccca cgagaagaag gtgtatctca aagtgcggcc agatgagatc
901 atgagagact atatccagaa gcacccagag ctgaacatca gtgaggaggg tatcaccaag
961 tccaccctca ccaaggccga acgccagctc aaggacaagt ttgacgggcg acccaccaag
1021 ccacctccga acagctactc gctgtactgc gcagagctca tggccaacat gaaggacgtg
1081 cccagcacag agcgcatggt gctgtgcagc cagcagtgga agctgctgtc ccagaaggag
1141 aaggacgcct atcacaagaa gtgtgatcaa aaa
//