LOCUS BC031281 2835 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens tetratricopeptide repeat domain 16, mRNA (cDNA clone
MGC:39779 IMAGE:5295890), complete cds.
ACCESSION BC031281
VERSION BC031281.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2835)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2835)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-JUN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 63 Row: m Column: 9
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 21450644.
FEATURES Location/Qualifiers
source 1..2835
/db_xref="H-InvDB:HIT000041271"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:39779 IMAGE:5295890"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..2835
/gene="TTC16"
/gene_synonym="FLJ32780"
/gene_synonym="RP11-56D16.6"
/db_xref="GeneID:158248"
/db_xref="HGNC:HGNC:26536"
CDS 81..2702
/gene="TTC16"
/gene_synonym="FLJ32780"
/gene_synonym="RP11-56D16.6"
/codon_start=1
/product="tetratricopeptide repeat domain 16"
/protein_id="AAH31281.1"
/db_xref="GeneID:158248"
/db_xref="HGNC:HGNC:26536"
/translation="MTDSDEDALKVDQGPSRDIPKPWVIPAPKGILQHIFGTSHVFQS
ICDVKPKVTGLTVPLKVREYYSRGQQCLEQADWETAVLLFSRALHLDPQLVDFYALRA
EAYLQLCDFSSAAQNLRRAYSLQQDNCKHLERLTFVLYLQGQCLFEQCAFLDALNVFS
HAAELQPEKPCFRYRCMACLLALKQHQACLTLITNELKQDTTNADVYIFRARLYNFLQ
KPHLCYRDLHSALLLNPKHPQARMLLQKMVAQAQQARQDAGILAVQGKLQHALQRINR
AIENNPLDPSLFLFRGTMYRRLQEFDGAVEDFLKVLDMVTEDQEDMVRQAQRQLLLTY
NDFAVHCYRQGAYQEGVLLLNKALRDEQQEKGLYINRGDCFFQLGNLAFAEADYQQAL
ALSPQDEGANTRTGLLQEKMGFCEQRRKQFQKAENHFSTAIRHNPQKAQYYLYRAKSR
QLLQNIFGARQDVATVLLLNPKQPKLSLLMTNLFPGMSVEEVLSTQIAHLARLQLEQM
VEGSLQAGSPQGIVGMLKRHELERQKALALQHSWKQGEPLIATSEELKATPEIPQVKP
GSSEGEAEAPEEEEEKEKEKKGEKKSELIPSKVASLSDSYLDQTSSASSMSFRTTGTS
ETEMSAICQEYRSTSATAVTFSDSSLLKTQSSDSGNNREALSHGPRKIKATQGQRQSL
SKTEPTQSQRRNSSKTKATIHKRNSSKTKATQSQRRNSSKTRATQGQGQSSSKTEATQ
GQRQSSSEIEATQGPRQEPSKTKTTRSPRQRPRKVKAARGRSWRPSKVDATQGRSRGL
LRSSTKTEAFYDSNWSLSKTEYAQGQGQRSSKAEGAQGKSQGMSSTSSKAESTWGPSP
SLSKTEVDQDLTYYESV"
BASE COUNT 694 a 876 c 822 g 443 t
ORIGIN
1 ggtgatggtg cctagcaacg tcagggccag ggccgcgagg tagttggcag aggcctcggg
61 gtcctcctgg aaggggcctc atgacagatt cggacgagga tgccctgaag gttgaccagg
121 gcccctcacg ggacatccca aagccatggg tgattccagc ccccaaaggg atcctgcagc
181 acatctttgg gaccagccac gtgttccaaa gcatctgtga tgtaaaacca aaggtcacag
241 ggttaacagt gcccctcaaa gtcagggaat actactccag aggccagcag tgcttggagc
301 aggcagactg ggagacagct gtgctgctct tctcccgcgc actccacctg gacccacagc
361 tggtggactt ctatgcctta cgggctgagg cctacctcca gctctgtgac ttctcctcgg
421 ccgcccagaa cctgcgaagg gcctactcat tacagcagga caactgcaag cacctggagc
481 gcctcacctt tgtgctctac ctacagggac aatgcctttt tgagcagtgt gccttcctgg
541 atgccctgaa tgtcttctca catgctgctg agctccagcc tgagaaacca tgcttccgtt
601 accgatgcat ggcctgtctc ctggccctca agcagcatca ggcctgcctc acgctcatca
661 ccaacgagct gaagcaggac accaccaacg ccgatgtcta catcttccgg gccagactct
721 acaactttct ccagaagccc cacctctgct accgggacct gcacagcgcc ttgctgttga
781 atcccaagca cccgcaggcc aggatgctgc tccagaagat ggtggcccag gcccagcagg
841 cgcgccaaga tgcggggatc ctggctgtgc agggcaagct gcagcacgca ctgcagcgga
901 tcaaccgtgc catcgagaac aaccctctgg accccagtct cttcctcttc cggggcacca
961 tgtaccgacg gctccaggag ttcgatgggg cagtggagga cttcctgaag gtgctggaca
1021 tggtgaccga ggaccaggag gacatggtgc ggcaggcaca gcgccagctg ttgctgacct
1081 acaacgactt tgccgtgcac tgctacaggc agggcgccta ccaggagggc gtgctgctgc
1141 tgaacaaggc cctccgggac gagcagcagg agaaaggact ctacatcaac cgaggcgatt
1201 gcttcttcca gctgggcaac ctggcctttg ccgaggcgga ctaccagcag gcgctggcgc
1261 tgagtcctca ggacgagggc gccaacacgc gcacgggcct gctgcaggag aagatgggct
1321 tctgcgagca gaggcgcaag cagttccaga aggcagagaa ccacttctcc acggccatcc
1381 ggcacaaccc ccagaaggcc cagtactacc tgtaccgggc caagagccgg cagctgctgc
1441 agaacatttt tggggcccgc caggatgtgg ccactgtcct gctcctcaac cccaagcaac
1501 caaagctgtc cctgctgatg accaacctct tcccgggcat gtcggtggag gaggtgctta
1561 gcacccagat agcccacctg gccaggctgc agctggagca gatggtggag ggcagcctgc
1621 aggccggcag cccacaaggc attgtgggga tgcttaagcg gcacgagttg gagcgccaga
1681 aggccttggc cctgcagcac tcatggaagc agggggagcc tttgattgcg acctccgagg
1741 agctgaaggc cacccctgag attccgcagg taaaaccggg aagctcagag ggagaggctg
1801 aggcccctga ggaggaggaa gaaaaggaga aggagaaaaa aggggagaaa aaatcagagc
1861 tcatacctag caaggtggcg tccctgtctg acagctacct tgaccagacc tcttcagcct
1921 ccagcatgag cttcaggacc acaggcacct cagagactga gatgtcggct atctgccagg
1981 aatacaggag cacctcagcc accgccgtga cattctctga ctcgtcactg ttgaagacgc
2041 aatcctcgga ctctgggaac aacagggagg cactaagcca tggtcccaga aaaatcaagg
2101 ccacccaggg ccagaggcag agccttagca agactgagcc cacccagagc cagaggcgga
2161 actccagcaa gaccaaggcc actatacaca agaggaactc cagcaagacc aaggccaccc
2221 aaagccagag gcggaactcc agcaagacca gggccaccca gggccagggg cagagctcca
2281 gcaagactga ggccactcag ggccagaggc agagctccag cgagattgag gccacccagg
2341 gcccaaggca ggagcccagc aagaccaaga ccacccggag cccaaggcag aggcccagaa
2401 aggtcaaggc tgctcgtggc cggagctgga gacccagcaa ggttgatgcc acccagggcc
2461 gaagcagggg actgctccga agttccacca agactgaggc tttctatgac tcaaactgga
2521 gcctcagcaa gactgagtat gcccaaggcc agggccagag gtccagcaag gctgagggtg
2581 cccagggcaa gagccagggc atgagctcaa cttccagcaa ggccgagtcc acctggggac
2641 ccagcccaag tctcagcaaa actgaggttg atcaggacct cacctactat gaatctgtct
2701 gaagggacca tccagaccct cccttcttgc tggggagggg atgagttcta cccacctccc
2761 cacactggca ctcagccagc tgcctccttc cagagcaatt aaaagtctta gcaacagtca
2821 aaaaaaaaaa aaaaa
//