LOCUS BC031213 2448 bp mRNA linear HUM 17-JUL-2007
DEFINITION Homo sapiens ISL LIM homeobox 1, mRNA (cDNA clone MGC:39494
IMAGE:5269369), complete cds.
ACCESSION BC031213
VERSION BC031213.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2448)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2448)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-JUN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 63 Row: h Column: 24
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 4504736.
FEATURES Location/Qualifiers
source 1..2448
/db_xref="H-InvDB:HIT000051021"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:39494 IMAGE:5269369"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..2448
/gene="ISL1"
/gene_synonym="Isl-1"
/db_xref="GeneID:3670"
/db_xref="HGNC:HGNC:6132"
/db_xref="MIM:600366"
CDS 550..1599
/gene="ISL1"
/gene_synonym="Isl-1"
/codon_start=1
/product="ISL LIM homeobox 1"
/protein_id="AAH31213.1"
/db_xref="GeneID:3670"
/db_xref="HGNC:HGNC:6132"
/db_xref="MIM:600366"
/translation="MGDMGDPPKKKRLISLCVGCGNQIHDQYILRVSPDLEWHAACLK
CAECNQYLDESCTCFVRDGKTYCKRDYIRLYGIKCAKCSIGFSKNDFVMRARSKVYHI
ECFRCVACSRQLIPGDEFALREDGLFCRADHDVVERASLGAGDPLSPLHPARPLQMAA
EPISARQPALRPHVHKQPEKTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMT
GLSPRVIRVWFQNKRCKDKKRSIMMKQLQQQQPNDKTNIQGMTGTPMVAASPERHDGG
LQANPVEVQSYQPPWKVLSDFALQSDIDQPAFQQLVNFSEGGPGSNSTGSEVASMSSQ
LPDTPNSMVASPIEA"
BASE COUNT 665 a 597 c 629 g 557 t
ORIGIN
1 tgaaggaaga ggaagaggag gagagggagg ccagagccag aacagcccgg cagcccgggc
61 ttcgggggag aacggcctga gccccgagca agttgcctcg ggagccctaa tcctctcccg
121 ctggctcgcc gagcggtcag tggcgctcag cggcggcgag gctgaaatat gataatcaga
181 acagctgcgc cgcgcgccct gcagccaatg ggcgcggcgc tcgcctgacg tccccgcgcg
241 ctgcgtcaga ccaatggcga tggagctgag ttggagcaga gaagtttgag taagagataa
301 ggaagagagg tgcccgagcc gcgccgagtc tgccgccgcc gcagcgcctc cgctccgcca
361 actccgccgg cttaaattgg aatcctagat ccgcgagggc gcggcgcagc cgagcagcgg
421 ctctttcagc attggcaacc ccaggggcca atatttccca cttagccaca gctccagcat
481 cctctctgtg ggctgttcac cagctgtaca accaccattt cactgtggac attactccct
541 cttacagata tgggagacat gggagatcca ccaaaaaaaa aacgtctgat ttccctatgt
601 gttggttgcg gcaatcagat tcacgatcag tatattctga gggtttctcc ggatttggaa
661 tggcatgcgg catgtttgaa atgtgcggag tgtaatcagt atttggacga gagctgtaca
721 tgctttgtta gggatgggaa aacctactgt aaaagagatt atatcaggtt gtacgggatc
781 aaatgcgcca agtgcagcat cggcttcagc aagaacgact tcgtgatgcg tgcccgctcc
841 aaggtgtatc acatcgagtg tttccgctgt gtggcctgca gccgccagct catccctggg
901 gacgaatttg cgcttcggga ggacggtctc ttctgccgag cagaccacga tgtggtggag
961 agggccagtc taggcgctgg cgacccgctc agtcccctgc atccagcgcg gccactgcaa
1021 atggcagcgg agcccatctc cgccaggcag ccggccctgc ggccccacgt ccacaagcag
1081 ccggagaaga ccacccgcgt gcggactgtg ctgaacgaga agcagctgca caccttgcgg
1141 acctgctacg ccgcaaaccc gcggccagat gcgctcatga aggagcaact ggtagagatg
1201 acgggcctca gtccccgtgt gatccgggtc tggtttcaaa acaagcggtg caaggacaag
1261 aagcgaagca tcatgatgaa gcaactccag cagcagcagc ccaatgacaa aactaatatc
1321 caggggatga caggaactcc catggtggct gccagtccag agagacacga cggtggctta
1381 caggctaacc cagtggaagt acaaagttac cagccacctt ggaaagtact gagcgacttc
1441 gccttgcaga gtgacataga tcagcctgct tttcagcaac tggtcaattt ttcagaagga
1501 ggaccgggct ctaattccac tggcagtgaa gtagcatcaa tgtcctctca acttccagat
1561 acacctaaca gcatggtagc cagtcctatt gaggcatgag gaacattcat tctgtatttt
1621 ttttccctgt tggagaaagt gggaaattat aatgtcgaac tctgaaacaa aagtatttaa
1681 cgacccagtc aatgaaaact gaatcaagaa atgaatgctc catgaaatgc acgaagtctg
1741 ttttaatgac aaggtgatat ggtagcaaca ctgtgaagac aatcatggga ttttactaga
1801 attaaacaac aaacaaaacg caaaacccag tatatgctat tcaatgatct tagaagtact
1861 gaaaaaaaaa gacgttttta aaacgtagag gatttatatt caaggatctc aaagaaagca
1921 ttttcatttc actgcacatc tagagaaaaa caaaaataga aaattttcta gtccatccta
1981 atctgaatgg tgctgtttct atattggtca ttgccttgcc aaacaggagc tccagcaaaa
2041 gcgcaggaag agagactggc ctccttggct gaaagagtcc tttcaggaag gtggagctgc
2101 attggtttga tatgtttaaa gttgacttta acaaggggtt aattgaaatc ctgggtctct
2161 tggcctgtcc tgtagctggt ttatttttta ctttgccccc tccccacttt ttttgagatc
2221 catcctttat caagaagtct gaagcgactt taaaggtttt tgaattcaga tttaaaaacc
2281 aacttataaa gcattgcaac aaggttacct ctattttgcc acaagcgtct cgggattgtg
2341 tttgacttgt gtctgtccaa gaacttttcc cccaaagatg tgtatagtta ttggttaaaa
2401 tgactgtttt ctctctctat ggaaataaaa aggaaaaaaa aaaaaaaa
//