LOCUS BC031094 2122 bp mRNA linear HUM 21-JUL-2006
DEFINITION Homo sapiens zinc finger, SWIM-type containing 2, mRNA (cDNA clone
MGC:33890 IMAGE:5298288), complete cds.
ACCESSION BC031094
VERSION BC031094.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2122)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2122)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-JUN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 48 Row: n Column: 24
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 71043931.
FEATURES Location/Qualifiers
source 1..2122
/db_xref="H-InvDB:HIT000041245"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:33890 IMAGE:5298288"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..2122
/gene="ZSWIM2"
/gene_synonym="MGC33890"
/gene_synonym="ZZZ2"
/db_xref="GeneID:151112"
/db_xref="HGNC:HGNC:30990"
CDS 40..1941
/gene="ZSWIM2"
/gene_synonym="MGC33890"
/gene_synonym="ZZZ2"
/codon_start=1
/product="zinc finger, SWIM-type containing 2"
/protein_id="AAH31094.1"
/db_xref="GeneID:151112"
/db_xref="HGNC:HGNC:30990"
/translation="MLRRGYKASERRRHLSERLSWHQDQALSSSIYLLREMGPTGFLL
REEEPEYMDFRVFLGNPHVCNCSTFPKGGELCKHICWVLLKKFELPRNHESALQLGLG
EREISDLLRGIHRVQTPQPGTNDENEHVEEDGYIKQKEIDSEDICSICQELLLEKKLP
VTFCRFGCGNSIHIKCMKILANYQSTSNTSMLKCPLCRKEFAPLKLILEEFKNSSKLV
AAAEKERLDKHLGIPCNNCKQFPIEGKCYKCTECIEYHLCQECFDSYCHLSHTFTFRE
KRNQKWRSLEKRADEVVKYIDTKNETEEKMSHFQEKQGQVYTPKHIVRSLPLQLITKN
SKLLAPGYQCLLCLKAFHLGQHTRLLPCTHKFHRKCIDNWLFHKCNSCPIGGQVIYNP
LTWKNSAVNGQAHQSVSNRDIIHLSKQKEPDLFIPGTGLVLKQNRLGILPSIPQCNFD
ELNTPQSPKDAYENTTIDNLCSIKLDNSNSKKLTYEYKISQHFPRYLQDLPTVSFGKI
PSQTLLPPIVHKNIVCPTAMESPCISGKYHTSLSRVTKGCKCNNHNLKKTPATKIRED
NKRSTLLPEDFNLIVNWSTAKLSLSKRYSNCMGEITRKCSHLSRQPVSHSVNTKSTEL
SLIIEGVQL"
BASE COUNT 756 a 408 c 401 g 557 t
ORIGIN
1 agtagccgag cagaggggcc gcctccgccc ccacccagca tgcttcgccg aggctataag
61 gcctctgaaa ggcgaagaca cttgagcgag aggctcagct ggcaccaaga ccaggcgctg
121 agtagcagca tctacctcct acgagagatg ggccccactg gcttcctgct gagggaggag
181 gagccggaat acatggattt ccgagttttt ctaggaaatc ctcacgtttg taactgttcc
241 acatttccga aaggagggga actttgtaag catatctgct gggtcttgtt gaaaaaattc
301 gagcttccaa ggaaccatga atctgcttta caactgggtc ttggagaaag agagataagt
361 gacttgcttc gggggataca tcgagttcaa actccccaac caggaacaaa tgacgagaat
421 gaacatgttg aagaagatgg gtacattaaa cagaaggaaa ttgattcaga ggatatctgc
481 tctatttgtc aagagctact tttagagaaa aagcttcctg tcaccttttg caggtttggc
541 tgtggcaata gtattcatat aaaatgcatg aagatcttag ctaattatca gagtacatca
601 aacacttcca tgttgaaatg tcctctgtgc aggaaagagt ttgcaccatt aaaactgatt
661 ttggaggaat tcaaaaactc tagcaaacta gtagctgcag cagaaaaaga gagactggac
721 aaacaccttg ggattccctg taataactgc aaacagtttc caattgaggg gaagtgttat
781 aagtgtaccg aatgcataga atatcactta tgccaggaat gttttgatag ctactgccat
841 ctttcccaca cgtttacatt tcgtgagaaa agaaaccaaa aatggagatc actagaaaaa
901 agagcagatg aagttgtaaa atacatagat actaaaaatg agactgaaga aaagatgtca
961 cattttcaag aaaagcaagg ccaagtttac acaccaaaac acattgtaag atcactgcct
1021 ctccaactga ttactaagaa tagtaagctg cttgctccag gctaccagtg tctactttgt
1081 ttgaaggcat ttcatcttgg tcaacataca agattgctac catgtactca caagtttcac
1141 aggaagtgta ttgacaactg gttattccac aagtgcaatt catgccctat tggtggacaa
1201 gttatatata accctttaac ttggaaaaat tcagcagtga atggacaagc acatcagtct
1261 gtttcaaaca gagacatcat tcatctatca aagcagaaag aaccagatct ttttattcct
1321 ggtactggat tagtcttaaa acaaaataga cttggaattt tacctagcat acctcagtgt
1381 aattttgatg aattgaatac acctcaaagc ccaaaagatg cctatgaaaa tacaacaata
1441 gataatctat gctctatcaa attagataat tcaaattcaa aaaaattaac ctatgaatat
1501 aaaattagcc aacattttcc caggtatctt caagatttac ccactgtatc atttgggaaa
1561 ataccatctc aaacactgct tcctcctatt gttcataaga atattgtatg tcccactgca
1621 atggaaagtc catgcatcag tggaaaatat cacactagtc taagccgggt gaccaaaggc
1681 tgtaaatgta ataaccacaa cctaaagaag actcctgcca ctaaaataag agaggacaac
1741 aagcgatcaa ctttacttcc agaggatttc aatcttattg tcaattggag cacagctaaa
1801 cttagtttgt ctaaaaggta tagtaactgt atgggggaaa ttacacgaaa atgtagtcat
1861 ctatcaagac agcctgtgtc tcactctgta aatacaaaaa gtactgagct atctttaata
1921 atagaagggg ttcaattgtg aaaaagttta ctatctgaaa atatttgaat gttgaatata
1981 aaaaaatgtt ttatatagaa cataaaaagc acacatagtc ttgacaaatg tatataaaat
2041 tctctgttgg aatttgccta cttacctata aacagctcac tacacttaaa aaaaaaaaaa
2101 aaaaaagaaa aaaaaaaaaa aa
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