LOCUS BC031052 2594 bp mRNA linear HUM 17-JUL-2006 DEFINITION Homo sapiens TNF receptor-associated factor 6, mRNA (cDNA clone MGC:33100 IMAGE:5272008), complete cds. ACCESSION BC031052 VERSION BC031052.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2594) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2594) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (03-JUN-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Miklos Palkovits, M.D., Ph.D. cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki Toshiyuki and Piero Carninci (RIKEN) cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 48 Row: c Column: 19 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 22027628. FEATURES Location/Qualifiers source 1..2594 /db_xref="H-InvDB:HIT000041221" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:33100 IMAGE:5272008" /tissue_type="Testis" /clone_lib="NIH_MGC_97" /lab_host="DH10B" /note="Vector: pBluescriptR" gene 1..2594 /gene="TRAF6" /gene_synonym="MGC:3310" /gene_synonym="RNF85" /db_xref="GeneID:7189" /db_xref="HGNC:HGNC:12036" /db_xref="MIM:602355" CDS 327..1895 /gene="TRAF6" /gene_synonym="MGC:3310" /gene_synonym="RNF85" /codon_start=1 /product="TNF receptor-associated factor 6" /protein_id="AAH31052.1" /db_xref="GeneID:7189" /db_xref="HGNC:HGNC:12036" /db_xref="MIM:602355" /translation="MSLLNCENSCGFSQSESDCCVAMASSCSAVTKDDSVGGTASTGN LSSSFMEEIQGYDVEFDPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAG HKCPVDNEILLENQLFPDNFAKREILSLMVKCPNEGCLHKMELRHLEDHQAHCEFALM DCPQCQRPFQKFHINIHILKDCPRRQVSCDNCAASMAFEDKEIHDQNCPLANVICEYC NTILIREQMPNHYDLDCPTAPIPCTFSTFGCHEKMQRNHLARHLQENTQSHMRMLAQA VHSLSVIPDSGYISEVRNFQETIHQLEGRLVRQDHQIRELTAKMETQSMYVSELKRTI RTLEDKVAEIEAQQCNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMR LHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQGTIRLTILDQSEAPVRQNHEEIM DAKPELLAFQRPTIPRNPKGFGYVTFMHLEALRQRTFIKDDTLLVRCEVSTRFDMGSL RREGFQPRSTDAGV" BASE COUNT 746 a 563 c 578 g 707 t ORIGIN 1 gggcagtggc gtccgcagct ggggcttggc ctgcgggcgg ccagcgaagg tggcgaaggc 61 tcccactgga tccagagttt gccgtccaag cagcctcgtc tcggcgcgca gtgtctgtgt 121 ccgtcctcta ccggcgcctt ggctgagcgg agtcgtgcgg ttggtggggg agccctgccc 181 tcctggttcg gcctccccgc gcactagaac gatcatgaac ttctgaaggg acccagcttt 241 ctttgtgtgc tccaagtgat ttgcacaaat aataatatat atatttattg aaggagagaa 301 tcagagcaag tgataatcaa gttactatga gtctgctaaa ctgtgaaaac agctgtggat 361 tcagccagtc tgaaagtgac tgctgtgtgg ccatggccag ctcctgtagc gctgtaacaa 421 aagatgatag tgtgggtgga actgccagca cggggaacct ctccagctca tttatggagg 481 agatccaggg atatgatgta gagtttgacc cacccctgga aagcaagtat gaatgcccca 541 tctgcttgat ggcattacga gaagcagtgc aaacgccatg cggccatagg ttctgcaaag 601 cctgcatcat aaaatcaata agggatgcag gtcacaaatg tccagttgac aatgaaatac 661 tgctggaaaa tcaactattt ccagacaatt ttgcaaaacg tgagattctt tctctgatgg 721 tgaaatgtcc aaatgaaggt tgtttgcaca agatggaact gagacatctt gaggatcatc 781 aagcacattg tgagtttgct cttatggatt gtccccaatg ccagcgtccc ttccaaaaat 841 tccatattaa tattcacatt ctgaaggatt gtccaaggag acaggtttct tgtgacaact 901 gtgctgcatc aatggcattt gaagataaag agatccatga ccagaactgt cctttggcaa 961 atgtcatctg tgaatactgc aatactatac tcatcagaga acagatgcct aatcattatg 1021 atctagactg ccctacagcc ccaattccat gcacattcag tacttttggt tgccatgaaa 1081 agatgcagag gaatcacttg gcacgccacc tacaagagaa cacccagtca cacatgagaa 1141 tgttggccca ggctgttcat agtttgagcg ttatacccga ctctgggtat atctcagagg 1201 tccggaattt ccaggaaact attcaccagt tagagggtcg ccttgtaaga caagaccatc 1261 aaatccggga gctgactgct aaaatggaaa ctcagagtat gtatgtaagt gagctcaaac 1321 gaaccattcg aacccttgag gacaaagttg ctgaaatcga agcacagcag tgcaatggaa 1381 tttatatttg gaagattggc aactttggaa tgcatttgaa atgtcaagaa gaggagaaac 1441 ctgttgtgat tcatagccct ggattctaca ctggcaaacc cgggtacaaa ctgtgcatgc 1501 gcttgcacct tcagttaccg actgctcagc gctgtgcaaa ctatatatcc ctttttgtcc 1561 acacaatgca aggagaatat gacagccacc tcccttggcc cttccagggt acaatacgcc 1621 ttacaattct tgatcagtct gaagcacctg taaggcaaaa ccacgaagag ataatggatg 1681 ccaaaccaga gctgcttgct ttccagcgac ccacaatccc acggaaccca aaaggttttg 1741 gctatgtaac ttttatgcat ctggaagccc taagacaaag aactttcatt aaggatgaca 1801 cattattagt gcgctgtgag gtctccaccc gctttgacat gggtagcctt cggagggagg 1861 gttttcagcc acgaagtact gatgcagggg tatagcttgc cctcacttgc tcaaaaacaa 1921 ctacctggag aaaacagtgc ctttccttgc cctgttctca ataacatgca aacaaacaag 1981 ccacgggaaa tatgtaatat ctactagtga gtgttgttag agaggtcact tactatttct 2041 tcctgttaca aatgatctga ggcagttttt tcctgggaat ccacacgttc catgcttttt 2101 cagaaatgtt aggcctgaag tgcctgtggc atgttgcagc agctattttg ccagttagta 2161 tacctctttg ttgtactttc ttgggctttt gctctggtgt attttattgt cagaaagtcc 2221 agactcaaga gtactaaact tttaataata atggattttc cttaaaactt cagtcttttt 2281 gtagtattat atgtaatata ttaaaagtga aaatcactac cgccttgtgc tagtgccctc 2341 gagaagagtt attgctctag aaagttgagt tctcattttt ttaacctgtt atagatttca 2401 gaggatttga accataatcc ttggaaaact taagttctca ttcaccccag tttttcctcc 2461 aggttgttac taaggatatt cagggatgag tttaaaccct aaatataacc ttaattattt 2521 agtgtaaaca tgtctgttga ataatacttg tttaagtgtt aaaaaaaaaa aaaaaaagaa 2581 aaaaaaaaaa aaaa //