LOCUS BC031051 3057 bp mRNA linear HUM 17-JUL-2006 DEFINITION Homo sapiens cadherin 18, type 2, mRNA (cDNA clone MGC:33098 IMAGE:5278717), complete cds. ACCESSION BC031051 VERSION BC031051.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3057) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 3057) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (03-JUN-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Miklos Palkovits, M.D., Ph.D. cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki Toshiyuki and Piero Carninci (RIKEN) cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 48 Row: h Column: 3 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 16445394. FEATURES Location/Qualifiers source 1..3057 /db_xref="H-InvDB:HIT000041220" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:33098 IMAGE:5278717" /tissue_type="Brain, hypothalamus" /clone_lib="NIH_MGC_96" /lab_host="DH10B" /note="Vector: pBluescriptR" gene 1..3057 /gene="CDH18" /gene_synonym="CDH14" /gene_synonym="CDH14L" /gene_synonym="CDH24" /gene_synonym="EY-CADHERIN" /db_xref="GeneID:1016" /db_xref="HGNC:HGNC:1757" /db_xref="MIM:603019" CDS 491..2863 /gene="CDH18" /gene_synonym="CDH14" /gene_synonym="CDH14L" /gene_synonym="CDH24" /gene_synonym="EY-CADHERIN" /codon_start=1 /product="cadherin 18, type 2" /protein_id="AAH31051.1" /db_xref="GeneID:1016" /db_xref="HGNC:HGNC:1757" /db_xref="MIM:603019" /translation="MKITSTSCICPVLVCLCFVQRCYGTAHHSSIKVMRNQTKHIEGE TEVHHRPKRGWVWNQFFVLEEHMGPDPQYVGKLHSNSDKGDGSVKYILTGEGAGTIFI IDDTTGDIHSTKSLDREQKTHYVLHAQAIDRRTNKPLEPESEFIIKVQDINDNAPKFT DGPYIVTVPEMSDMGTSVLQVTATDADDPTYGNSARVVYSILQGQPYFSVDPKTGVIR TALHNMDGEAREHYSVVIQAKDMAGQVGGLSGSTTVNITLTDVNDNTPRFPQKHYQLY VPESAQVGSAVGKIKANDADTGSNADMTYSIINGDGMGIFSISTDKETREGILSLKKP LNYEKKKSYTLNIEGANTHLDFRFSHLGPFKDATMLKIIVGDVDEPPLFSMPSYLMEV YENAKIGTVVGTVLAQDPDSINSLVRYFINYNVEDDRFFNIDANTGTIRTTKVLDREE TPWYNITVTASEIDNPDLLSHVTVGIRVLDVNDNPPELAREYDIIVCENSKPGQVIHT ISATDKDDFANGPRFNFFLDERLPVNPNFTLKDNEDNTASILTRRRRFSRTVQDVYYL PIMISDGGIPSLSSSSTLTIRVCACERDGRVRTCHAEAFLSSAGLSTGALIAILLCVL ILLAIVVLFITLRRSKKEPLIISEEDVRENVVTYDDEGGGEEDTGAFDITALRNPSAA EELKYRRDIRPEVKLTPRHQTSSTLESIDVQEFIKQRLAEADLDPSVPPYDSLQTYAY EGQRSEAGSISSLDSATTQSDQDYHYLGDWGPEFKKLAELYGEIESERTT" BASE COUNT 923 a 667 c 697 g 770 t ORIGIN 1 gggtctgggc tttccgagga cggcgagcag ctgtgcccag agctctggga aagtcccctc 61 tctttgcttc ttataaatta agttcctttc caccagttag ggcaagtccg ccaagataga 121 ctgaagagga gcaagaacag aaacagggag ccagttacag atctatccca agaattctgg 181 ggagagatga tggtgtctgc agcagagtga cagcagtgga gattgagaga aaaggttgaa 241 aatggttgct tgtgttcaac tactgtgaag agttggaatc agacaactac ggcttttatt 301 ttccaagtgg ttcagaatgt aaatatgatc tgacctttcc ctgatggaca gttaaatcat 361 ggacacgcta aacaatttac tttggactgt ccttcctaaa gatgctctgg cttctctctt 421 gaatgctcac taagctttcg tagctgacaa ggaaaggaag gaaaactgtg aactggaaag 481 ttatcttaca atgaaaatta ctagcacatc ttgcatctgt ccagtcctag tgtgtctctg 541 ttttgtgcag aggtgttatg gaactgctca ccacagctcc atcaaggtga tgagaaacca 601 aaccaaacac attgaaggtg aaaccgaagt ccatcatcgt cccaaaaggg gatgggtatg 661 gaatcagttc tttgttttag aagaacatat gggaccagat cctcagtatg ttggaaagct 721 gcactccaat tctgacaaag gtgatggatc tgtcaagtac atccttactg gagagggtgc 781 tgggactata tttatcattg acgataccac gggtgatatc cactcaacaa aaagcctaga 841 cagagagcag aagacccact atgtgcttca tgctcaagct attgatagac gtacaaacaa 901 acctcttgag cctgaatccg agttcatcat caaagtgcaa gacatcaatg acaacgctcc 961 aaaattcaca gatggaccat acattgttac tgtgcctgaa atgtcagata tgggtacctc 1021 tgttctacag gtgacagcta ctgatgcaga tgaccctacc tatggaaaca gcgctcgggt 1081 ggtttacagc attctccagg gacaacccta cttctccgtc gaccctaaaa caggagttat 1141 tagaacggcc ttacataaca tggacggaga agccagagaa cattactccg tagtcattca 1201 agccaaagac atggctgggc aagttggagg gctttcagga tctacaacag tcaacatcac 1261 cttaaccgat gtcaatgaca acacaccacg ctttcctcaa aaacactatc agctatatgt 1321 tcctgagtca gctcaagttg gttcagctgt tgggaaaatc aaggcaaatg atgctgacac 1381 tggctcaaat gctgacatga cctactccat cataaatggt gatggcatgg gaatattctc 1441 aatctccact gacaaagaga ccagagaagg aatcctttct ttaaagaagc cactgaacta 1501 tgagaaaaag aagtcatata ccctcaacat agaaggagca aatacacatc ttgattttcg 1561 cttttctcac ttgggtcctt ttaaagatgc tactatgctg aagatcattg ttggggatgt 1621 agatgaacca ccactatttt ccatgccttc ctacctcatg gaagtctacg aaaatgccaa 1681 gattgggacc gtcgttggta cagttttggc acaagatcct gacagtatta acagcttagt 1741 aagatacttc atcaactaca atgttgaaga cgacagattt ttcaacattg atgccaatac 1801 tgggaccatt aggactacaa aggttctcga cagagaagaa actccatggt acaacatcac 1861 agtcactgct tcagaaattg ataatcctga tttgctgagc catgtcacag tgggtattag 1921 agttctggat gtcaatgaca atccacccga acttgccagg gaatatgata ttattgtatg 1981 tgaaaattct aagcctggcc aggttattca taccatcagt gccactgata aagatgattt 2041 tgccaatgga ccaaggttta acttctttct tgatgagcgc ctgcctgtaa atccaaactt 2101 cactctgaag gacaatgaag ataacacagc cagcattctg acaaggcgga ggagatttag 2161 tcgaactgtt caggatgtgt attatctgcc cattatgatc tctgatggtg gaatcccctc 2221 tctcagcagc agcagcaccc tcaccatcag ggtttgtgca tgcgagagag atgggcgtgt 2281 gcggacctgc catgcagaag ccttcctgtc ctcggctggt ttgagtacag gagccttaat 2341 cgctattctt ctctgtgttc tcattctcct ggcaattgtg gtacttttta tcaccctgag 2401 gcgcagcaaa aaagagccct tgatcatttc agaagaggat gtacgggaga acgtggtcac 2461 ctatgatgat gaaggaggcg gagaggaaga cacaggggcc tttgacatca cagccttgag 2521 gaatccttct gctgctgagg agctcaagta ccggagggat atcagacctg aagtgaagct 2581 cactcccaga caccagacat catccaccct ggaaagcata gatgttcagg aatttattaa 2641 gcaaagactg gcagaagcag acctagaccc tagcgttccc ccttatgact ctcttcagac 2701 ttatgcctat gagggtcaga gatcagaagc tgggtctatc agctcgctgg attcagcaac 2761 gacacaatca gaccaggatt atcactacct tggagactgg ggacccgagt ttaaaaagtt 2821 agctgaactc tatggagaaa tagaatctga aagaacaact tagggggtca gttcttgcaa 2881 ccttgtggaa tttgcttcct gagtaagtgg atatacaacc tcagcaatga caaggaagaa 2941 gtgtggaaac agtacttgga actgaggaag ctggacacag ctcctgtaga aacaagtgcc 3001 cttttcatga tcgaaactgg gttatttaat tggaagaaag caaaaaaaaa aaaaaaa //