LOCUS BC031050 2485 bp mRNA linear HUM 17-JUL-2006 DEFINITION Homo sapiens sorting nexin 10, mRNA (cDNA clone MGC:33054 IMAGE:5278015), complete cds. ACCESSION BC031050 VERSION BC031050.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2485) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2485) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (03-JUN-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Miklos Palkovits, M.D., Ph.D. cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki Toshiyuki and Piero Carninci (RIKEN) cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 48 Row: h Column: 16 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 23111022. FEATURES Location/Qualifiers source 1..2485 /db_xref="H-InvDB:HIT000041219" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:33054 IMAGE:5278015" /tissue_type="Brain, hypothalamus" /clone_lib="NIH_MGC_96" /lab_host="DH10B" /note="Vector: pBluescriptR" gene 1..2485 /gene="SNX10" /gene_synonym="MGC33054" /db_xref="GeneID:29887" /db_xref="HGNC:HGNC:14974" CDS 110..715 /gene="SNX10" /gene_synonym="MGC33054" /codon_start=1 /product="sorting nexin 10" /protein_id="AAH31050.1" /db_xref="GeneID:29887" /db_xref="HGNC:HGNC:14974" /translation="MFPEQQKEEFVSVWVRDPRIQKEDFWHSYIDYEICIHTNSMCFT MKTSCVRRRYREFVWLRQRLQSNALLVQLPELPSKNLFFNMNNRQHVDQRRQGLEDFL RKVLQNALLLSYSSLHLFLQSHLNSEDIEACVSGQTKYSVEEAIHKFALMNRRFPEED EEGKKENDIDYDSESSSSGLGHSSDDSSSHGCKVNTAPQES" BASE COUNT 836 a 402 c 431 g 816 t ORIGIN 1 gctgtgcgcc tttgagtcag caaactccgc ggcccgcaag cccggctcgg cccggccctg 61 ctctgttctg cccggaggag ccgcccattg atcgtgtcct gtgctgaaga tgtttccgga 121 acaacagaaa gaggaatttg taagtgtctg ggttcgagat cctaggattc agaaggagga 181 cttctggcat tcttacattg actatgagat atgtattcat actaatagca tgtgttttac 241 aatgaaaaca tcctgtgtac gaagaagata tagagaattc gtgtggctga ggcagagact 301 ccaaagtaat gcgttgctgg tacaactgcc agaacttcca tctaaaaacc tgtttttcaa 361 catgaacaat cgccagcacg tggatcagcg tcgccagggt ctggaagatt tcctcagaaa 421 agtcctacag aatgcacttt tgctttcata tagcagcctt cacctcttct tacagagcca 481 tctgaattca gaagacattg aggcgtgtgt ttctgggcag actaagtact ctgtggaaga 541 agcaattcac aagtttgcct taatgaatag acgtttccct gaagaagatg aagaaggaaa 601 aaaagaaaat gatatagatt atgattcaga aagttcatcc tctgggcttg gacacagtag 661 tgatgacagc agttcacatg gatgtaaagt aaatacagct ccgcaggaat cctgaaaaat 721 aattctaatg ttactatctt aggaatagca aattatgtcc agtcatagag aagaaagctt 781 cataataata cattcttacc taaagctcac tgtcatgatg ttaggtattt aaattcttaa 841 agatgttggg ttgtttatta gtggtatttt tatgttgtct tattttaggt aagcttctgt 901 gtaaagctaa aaatcctgtg aatacaatac tatcctttac aggcagacat tattggtaaa 961 caagatcttg ccctccaatg aaatgactta catgttttaa aaaaccgagt tggttttatt 1021 gaatttaaaa agataggtaa ctaagtagca tttaaaatca agatagagca ttccttcttg 1081 tatcagtggg gcagtgttac cataaacacg gtgtatatgt tgttaaaccc tatgaagagt 1141 aacagtgtag accagactgc ctctctcaga tatgtgcctg atattttgtg gatacctccc 1201 ctgcactggc aaaacactat gcttttgggt gttagactga aatattttaa gagtatttaa 1261 cctttccagt attctgtttc acgcttagat ggaaatgtat cttatgaata gagacatatt 1321 aaaataatgt ttacatctta gaaaaaacat agatagtgct agtaatatta cttataactg 1381 taatatatag attcagaaat acattttcat tatccaaaat cagcttcaac aaatggtttc 1441 tggagacaaa taatttgttt tcattatcat tgtataatca ggttaatgat ttattttttg 1501 actaaatgtg caatttctta tcactagata actttcagta tcagtggtgg ttacttatta 1561 cttaaatcag aggaaggatt ttataaagat taataaattt aattttacca ttaaatattc 1621 ccataattta gaaaaggatg tcgacttgct aatttcagaa ataattattc atttttaaaa 1681 agcccgtttt aaagcatcta cttgaagatt ggtataattt tcataaaatg tctttttttt 1741 tagtgtccca aagatatctt agataaacta ttttgaagtt cagatttcag atgaggcaac 1801 attttcttga gataattacc caagtttcat ccatgttgaa tggtacaaaa tatttctgtg 1861 aaactaacag gaagatattt tcagataact aggataactt gttgctttgt tacccagcct 1921 aattgaagag tggcagaggc tactataaaa agcaaccttt tcattttcac taagagttta 1981 aaagctattg tattattaaa aagtctttac aatgcttgtt tcaaagaacc aacagaaaaa 2041 aaagctaaga aaactgagaa ctaacattaa aaaaattaaa tttagaataa gaatgatttc 2101 tttaatttgt cctttttttc tttggtctaa aacattatta aatttttgta aatattttga 2161 tttaatgtgt cttagatcct cattatttta atacaggaaa agaaaagatt tagtaatttc 2221 ttaccatgct aatatgtaaa gttcatgcca tccaggcatt taagagcgat cctcatccct 2281 tcagcaatat gtatttgagt tcacactatt tctgttttac agcagttttg aaaaacacat 2341 actatgccac caattgtcat attattttta gatgatgtaa catagccatc aaaattaata 2401 ttatgtaatg cctaatactt agtatgtaaa tgtcacgaga tcatttttac attaaacgtg 2461 aaaaaaaacc aaaaaaaaaa aaaaa //