LOCUS BC030822 1839 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens tetratricopeptide repeat domain 5, mRNA (cDNA clone
MGC:23948 IMAGE:4243419), complete cds.
ACCESSION BC030822
VERSION BC030822.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1839)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1839)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-JUN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 35 Row: a Column: 17
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 24308431.
FEATURES Location/Qualifiers
source 1..1839
/db_xref="H-InvDB:HIT000041156"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:23948 IMAGE:4243419"
/tissue_type="Skin, melanotic melanoma, high MDR."
/clone_lib="NIH_MGC_62"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..1839
/gene="TTC5"
/gene_synonym="Strap"
/db_xref="GeneID:91875"
/db_xref="HGNC:HGNC:19274"
CDS 2..1324
/gene="TTC5"
/gene_synonym="Strap"
/codon_start=1
/product="tetratricopeptide repeat domain 5"
/protein_id="AAH30822.1"
/db_xref="GeneID:91875"
/db_xref="HGNC:HGNC:19274"
/translation="MMADEEEEVKPILQKLQELVDQLYSFRDCYFETHSVEDAGRKQQ
DVRKEMEKTLQQMEEVVGSVQGKAQVLMLTGKALNVTPDYSPKAEELLSKAVKLEPEL
VEAWNQLGEVYWKKGDVAAAHTCFSGALTHCRNKVSLQNLSMVLRQLRTDTEDEHSHH
VMDSVRQAKLAVQMDVHDGRSWYILGNSYLSLYFSTGQNPKISQQALSAYAQAEKVDR
KASSNPDLHLNRATLHKYEESYGEALEGFSRAAALDPAWPEPRQREQQLLEFLDRLTS
LLESKGKVKTKKLQSMLGSLRPAHLGPCSDGHYQSASGQKVTLELKPLSTLQPGVNSG
AVILGKVVFSLTTEEKVPFTFGLVDSDGPCYAVMVYNIVQSWGVLIGDSVAIPEPNLR
LHRIQHKGKDYSFSSVRVETPLLLVVNGKPQGSSSQAVATVASRPQCE"
BASE COUNT 475 a 428 c 477 g 459 t
ORIGIN
1 gatgatggct gatgaagagg aagaagtcaa gccgatcttg cagaaattgc aggaactcgt
61 ggatcagctc tactcatttc gagactgcta tttcgagaca catagtgttg aggatgctgg
121 gaggaagcaa caggatgtgc ggaaggagat ggagaaaacc ctacagcaga tggaagaagt
181 agtgggttct gtccagggca aggcacaagt tctaatgcta actgggaaag cactaaatgt
241 gactcctgac tatagcccta aggctgagga gcttctgtca aaggctgtga agctggagcc
301 cgagctggtg gaagcctgga accagctggg tgaggtgtac tggaaaaaag gggatgttgc
361 agctgcccac acctgcttct caggagccct cacccattgc aggaacaaag tctccttgca
421 aaacctgtca atggtgcttc gtcagctgcg gactgacact gaagatgaac attctcacca
481 tgtcatggac agtgtccgac aggctaagtt ggctgttcag atggatgtcc atgatggccg
541 ctcctggtat attcttggga attcatatct ttccctttac ttctctactg gccagaaccc
601 taagatctcc cagcaagccc tcagtgccta tgcccaagca gagaaagttg acagaaaagc
661 ttctagcaat cctgaccttc atctgaacag ggcgacgttg cataaatatg aagagagtta
721 tggggaggcc ctggagggct tctctcgggc tgcagccctg gaccctgcct ggccagagcc
781 ccggcaacga gagcaacaac ttctggaatt cctggataga ttaaccagcc tccttgagag
841 taagggaaag gtgaagacca aaaagctgca gagcatgctg ggaagcttgc gcccagccca
901 tctaggccct tgcagtgatg ggcactatca gtcagcctct gggcagaaag tgaccctgga
961 gctcaagcca ctgagtacgc ttcagcctgg ggtgaacagc ggtgccgtca tcctgggaaa
1021 ggtggtattt agcctcacca cagaggagaa agtccccttt acatttggcc tggtagattc
1081 agatggacct tgctatgcag tgatggtgta caatatagtg cagagctggg gagtgctcat
1141 tggagactct gtagccattc ctgagcccaa cctgcggctt caccgaattc agcacaaagg
1201 aaaggactat tccttttcca gtgttcgagt ggagacgccc ctcctgctag tggtgaatgg
1261 gaagcctcag ggatccagca gccaggctgt tgccacagtg gcatcgcgac cacagtgtga
1321 atgacctttg acttgcatgc tcaacaggga gtggaggaga ggagacaagg ctctggacag
1381 ccggtccagc cacatccagt gattcagcag ggatgggagg aatgttttaa atgaagactt
1441 tctctttccc tgcctgtatt acacttcgta tctcttctcc ctcctctgtc ctcatcatgt
1501 tccagctctc tacagggcca catactcttc tggcatatct ctcctgtctc ttccactgct
1561 ctctatgttt taagcaaaga gcatggaatt ggtagaagtc ttgggatctt gccatgggac
1621 agagtcccca aggttcctgt tgttgcctcc ttcctaagcc tcatatgtat atatcagttc
1681 agtatttatt gctaaaggag ggggcttaat tttgtaatgg cttttatttt tagcaatttt
1741 tatttttatt tttgaacttt aggtccttcc tcttctttgg ggctggaaca gaattaaatt
1801 tgtttggata aaaaaaaaaa aaaaaaaaaa aaaaaaaaa
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