LOCUS BC030821 1943 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens glioblastoma amplified sequence, mRNA (cDNA clone
MGC:23931 IMAGE:4808962), complete cds.
ACCESSION BC030821
VERSION BC030821.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1943)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1943)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-JUN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 37 Row: p Column: 17
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 4503936.
FEATURES Location/Qualifiers
source 1..1943
/db_xref="H-InvDB:HIT000041155"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:23931 IMAGE:4808962"
/tissue_type="Lung, mucoepidermoid carcinoma"
/clone_lib="NIH_MGC_59"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..1943
/gene="GBAS"
/gene_synonym="NIPSNAP2"
/db_xref="GeneID:2631"
/db_xref="HGNC:HGNC:4179"
/db_xref="MIM:603004"
CDS 16..876
/gene="GBAS"
/gene_synonym="NIPSNAP2"
/codon_start=1
/product="glioblastoma amplified sequence"
/protein_id="AAH30821.1"
/db_xref="GeneID:2631"
/db_xref="HGNC:HGNC:4179"
/db_xref="MIM:603004"
/translation="MAARVLRARGAAWAGGLLQRAAPCSLLPRLRTWTSSSNRSREDS
WLKSLFVRKVDPRKDAHSNLLAKKETSNLYKLQFHNVKPECLEAYNKICQEVLPKIHE
DKHYPCTLVGTWNTWYGEQDQAVHLWRYEGGYPALTEVMNKLRENKEFLEFRKARSDM
LLSRKNQLLLEFSFWNEPVPRSGPNIYELRSYQLRPGTMIEWGNYWARAIRFRQDGNE
AVGGFFSQIGQLYMVHHLWAYRDLQTREDIRNAAWHKHGWEELVYYTVPLIQEMESRI
MIPLKTSPLQ"
BASE COUNT 619 a 388 c 403 g 533 t
ORIGIN
1 gaggcgccga gcaagatggc ggcgcgagtg ctgcgcgccc gcggagcggc ctgggccggc
61 ggcctcctgc agcgggcggc cccctgcagc ctcctgccca ggctccggac atggacatct
121 tccagcaaca gatctcgaga agacagctgg ctaaaatcct tatttgtccg gaaagttgat
181 ccaagaaaag atgcccactc caatctccta gccaaaaagg aaacaagcaa tctatacaaa
241 ttacagtttc acaatgttaa accggaatgc ctagaagcat acaacaaaat ttgtcaagag
301 gtgttgccaa agattcacga agataaacac tacccttgta ctttggtggg gacttggaac
361 acgtggtatg gcgagcagga ccaagctgtc cacctctgga ggtatgaagg aggctatcca
421 gccctcacag aagtcatgaa taaactcaga gaaaataagg aatttttgga atttcgtaag
481 gcaagaagtg acatgcttct ctccaggaag aatcagctcc tgttggagtt cagtttctgg
541 aatgagcctg tgccaagatc cggacctaat atatatgaac tcaggtctta ccaactccga
601 ccaggaacca tgattgaatg gggcaattac tgggctcgtg caatccgctt cagacaggat
661 ggtaacgaag ccgtcggagg attcttctct cagattgggc agctgtacat ggtgcaccat
721 ctttgggctt acagggatct tcagaccagg gaagacatac ggaatgcagc atggcacaaa
781 catggctggg aggaattggt atattacaca gttccactta ttcaggaaat ggaatccaga
841 atcatgatcc cactgaagac ctcgcccctc cagtaaagct gtagagtttc tatgtgccta
901 catacatttc tgtgacaagt atttgtcgta aattaatttt aattgtgtat caagtgaaaa
961 agaaacactg aggttttaag ctgctgtata tagcttgtga gaaacctctt ttctttaaaa
1021 tttacataat cacaagaaag gaaagaatta cagttggact gattgtgaca gtgccttgtc
1081 gtcctctttg aaacaccccg tgttgtccag tataccttat aacactgagc cacttctccc
1141 caccctccag aaggggtcca cgttgaattc tgaatcatct tgaaaataag attccaacca
1201 caaaaaaaat ttagccattt ctttactaaa aaaaaccaaa aaacaaatct gttttataat
1261 cacagatttt tagacaaatt tcttgtatca ggaagaaata caaattttgt catgtttctc
1321 aagcagtttt tctgagtagt ttctgaggag gaacaaatta caagtgtacc caataactga
1381 aaatgtttta actcactctc atttgtaagc agtccacata gtagacaatg ggttttccaa
1441 gctgggcaag gtacatttaa tcagtaaatc agtttcacat catgtattgt gatgtttcaa
1501 tgtgagacac aaaaacaatg gcttgaaact tgtgtatcat atgtgatttt gaaatgaaca
1561 ccttgaatag cactaatttt tatttgtggt atttttctat aacaaaacaa gtagctctag
1621 gaaaagaggt tttattttgt aaacgatcat ttgtgacctc agacactctc tggctaatat
1681 tttaataagc tcacagcaga taattctgag atcatgggtg aggggtggtg catgttgaga
1741 tttaaattgg cataaagctg catacttttt gtctagctgt ttgatttcat tttttaatat
1801 agtatgccaa ttttgtgact gttaccatgt gaaagtcctg ttgaaatgaa caattgtctg
1861 ccccacaatc aagaatgtat gtgtaaagtg tgaataaatc tcatatcaaa tgcaaaaaaa
1921 aaaaaaaaaa aaaaaaaaaa aaa
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