LOCUS BC030798 3078 bp mRNA linear HUM 26-JUN-2007
DEFINITION Homo sapiens fat mass and obesity associated, mRNA (cDNA clone
IMAGE:3457322), complete cds.
ACCESSION BC030798
VERSION BC030798.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3078)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3078)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-JUN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 20 Row: b Column: 16
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..3078
/db_xref="H-InvDB:HIT000092235"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3457322"
/tissue_type="Cervix, carcinoma"
/clone_lib="NIH_MGC_12"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..3078
/gene="FTO"
/db_xref="GeneID:79068"
/db_xref="HGNC:HGNC:24678"
/db_xref="MIM:610966"
CDS 125..508
/gene="FTO"
/codon_start=1
/product="FTO protein"
/protein_id="AAH30798.1"
/db_xref="GeneID:79068"
/db_xref="HGNC:HGNC:24678"
/db_xref="MIM:610966"
/translation="MEWRKVSECNSVEPCREVKKWPYRCIHHGKNFSRMTNAVLHEVK
REGLPVEQRNEILTAILASLTARQNLRREWHARCQSRIARTLPADQKPECRPYWEKDD
ASMPLPFDLTDIVSELRGQLLEAKP"
BASE COUNT 860 a 711 c 667 g 840 t
ORIGIN
1 gtttcaagag taaaggagaa caaagtaggg tgacctagtc tgaaggacag gcgcagaaca
61 gtcagtggaa cagccagaga tagcagcgag agaggtgaga agaggaccag gagtaggtgg
121 tagaatggag tggaggaaag tcagcgaatg taatagtgtc gaaccctgca gggaagttaa
181 gaagtggcca taccgttgca ttcatcatgg gaagaatttc agtagaatga caaatgctgt
241 gcttcatgaa gttaaaagag aggggctccc cgtggaacaa aggaatgaaa tcttgactgc
301 catccttgcc tcgctcactg cacgccagaa cctgaggaga gaatggcatg ccaggtgcca
361 gtcacgaatt gcccgaacat tacctgctga tcagaagcca gaatgtcggc catactggga
421 aaaggatgat gcttcgatgc ctctgccgtt tgacctcaca gacatcgttt cagaactcag
481 aggtcagctt ctggaagcaa aaccctagaa ggagcacaag tctcaggcgg aggagaaaaa
541 gagatcggct tttctcctcc aacgttgtca tgggcttaag caagagcagt ggagacttct
601 cttggcccct agattgtagc acccgggtcc caatccaaaa cagctaggaa atggtgccca
661 tgaagtttta aatgttttaa aatgaccctg tgttatagtc tgatttggtg ttaaacagga
721 ccttcttccc ccaaaattgt tcagattata aaatgtgagc cattcagccc ccaaggtcca
781 gggcaggcga caggaacgag cccagcgtgt gacaaagcct aacctacttt cctctttccc
841 aagctttttc agagactctg gagtggaccc agccctctgg ggaaagacag aacttagaga
901 catcccagtt actcaccaca cccatagtgc tgtccaatat ggtagccact agctagctgt
961 ggctacttca atttaaattc agttttaatt ttaattaaaa atgcagctct tcagtcgccc
1021 tggccacatt tcaagtgctt aacagcctca tgtggctagt gactgctgta ttggacggta
1081 cagatatgga acattttcat catcgaagaa agtcctattg gacaacactt ctataaaaag
1141 tttgagagca ggaattctca tttccattcg tctgtagctt ctatccccaa aggcaaagaa
1201 actaaaagag aaatgactca ttgaagattg gcctctttcc tttctctaag acaaacctaa
1261 gtaaaagcct gagctttgag tcctatgctc agcacacggg aaggagatgt taataattaa
1321 aataaagttg atatcctgtc tttagggagt tcccttgatc tcttgaaaga gacacagccc
1381 catttacatt atttcgtgga tttcaccagc atagtatagt ttttttctgt aagtccctca
1441 ttcttatgta ataacaggtg gaactgaggt ttgaagaacc tcagtggccc atcctgatga
1501 cattggagac tcaaagagac aagagagagt agggtttaaa acctgagctt taagactccc
1561 actagcttcg tgtcctttgg catgttaacg tgcctcagtt tcctcatctg tataatgggg
1621 atatatgaaa ggcaccagtc ctaaggtgaa cattaagtga gatgattcta gttacagact
1681 tagaacaatt tccagcacat agttaaatat ccaggaaatt ctggtactgt tatgtgtggg
1741 tgagctgacc tggatgtaga tgttttcctc tctcttgctg acccctccgc cagttttgtc
1801 ttgtgatgcc attaacacat ctctcccttt ctgacctggc tcctgcccat tggtgtccca
1861 agaaatcgtg agaatagtta gcccccctct ccccagcctg ttgctttctc gtgtagttgt
1921 tcacagtagt tgagaagttg aagagctttt gcctattgaa ggtgcactga gaataaactc
1981 tttcctgcca ccagaattgc agtggttcac ggcctgcact cattcccatg aatgcagtta
2041 atagccacag aaatgtcaca ttaagcaaag cagccagggt ctcatcgtgt tgagactcga
2101 gtctctcaga ccttggattc attccctggt gtctttgagc ctcagtttcc tcattggtaa
2161 aagagaagtg aagcagtgtc tcacagggtc attacagaga ttaaatgaaa taaatgaaat
2221 aacatagacc aggagggcgt ggtgtttaaa agtcacagat ggggcaccct cgggccatcc
2281 agcccagtgt tttctttagc ccctatgatg ttcatttttt gttatatccc attaggtgcc
2341 catatttaaa aattgggaga tttcacataa aattaaaagg tctgcatttt cttttttctt
2401 ttcttttttt tttttttgag acacagtctc actctgtcac caggctagag tgcagtggca
2461 cgatctcagc tcactgcaac ctctgcctcc caggttcaag taattctcct gcctcagcct
2521 cccaagtagc tgggactaca ggcacgtgcc accacgccca gctaattttt gtatttttag
2581 cagagatggg gtttcaccac attggccagg atgatctcga tctcaacctc gtgatccacc
2641 cacctcggtc tcccaaagcg ctgggattac aggcgtgagc caccgcgcca agccaaggtc
2701 tgcatttttc tttagaactc agaacaccca atagtcctag gcccccatcc tcgcatggca
2761 gcaagctaaa taagcatctt cccactgcga gttggggcat gacccagcct atggtttgcc
2821 atactccctc tttttctccg ttttttcatt aattgtgaac ctgacctgca tcaccctttc
2881 atgtcagtgc tctccaaacc tgcttgcttg cacccctcta gtcgaaatat tttgtgctta
2941 ccccaatata tgtgtgtgac tattgaactc tattcgtaga ctgcttgtac taatgtcatt
3001 tgcatcataa aatattcata tccaataaac atattaaaag gatgagataa gaaaaaaaaa
3061 aaaaaaaaaa aaaaaaaa
//