LOCUS BC030788 3396 bp mRNA linear HUM 11-AUG-2006
DEFINITION Homo sapiens zinc finger protein 548, mRNA (cDNA clone MGC:33264
IMAGE:5266647), complete cds.
ACCESSION BC030788
VERSION BC030788.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3396)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3396)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (31-MAY-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 25, 2003 this sequence version replaced BC030788.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 47 Row: k Column: 12
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 34303961.
FEATURES Location/Qualifiers
source 1..3396
/db_xref="H-InvDB:HIT000041134"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:33264 IMAGE:5266647"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..3396
/gene="ZNF548"
/gene_synonym="FLJ32932"
/db_xref="GeneID:147694"
/db_xref="HGNC:HGNC:26561"
CDS 251..1852
/gene="ZNF548"
/gene_synonym="FLJ32932"
/codon_start=1
/product="zinc finger protein 548"
/protein_id="AAH30788.1"
/db_xref="GeneID:147694"
/db_xref="HGNC:HGNC:26561"
/translation="MNLTEGRVVFEDVAIYFSQEEWGHLDEAQRLLYRDVMLENLALL
SSLGSWHGAEDEESPSQQGFSVGVSEVTTSKPCLSSQKVHPSETCGPPLKDILCLVEH
NGIHPEQHIYICEAELFQHPKQQIGENLSRGDDWIPSFGKNHRVHMAEEIFTCMEGWK
DLPATSCLLQHQGPQSEWKPYRDTEDREAFQTGQNDYKCSECGKTFTCSYSFVEHQKI
HTGERSYECNKCGKFFKYSANFMKHQTVHTSERTYECRECGKSFMYNYRLMRHKRVHT
GERPYECNTCGKFFRYSSTFVRHQRVHTGERPYECRECGKFFMDSSTLIKHQRVHTGE
RPYKCNDCGKFFRYISTLIRHQRIHTGERPYECSVCGELFRYNSSLVKHWRNHTGERP
YKCSECGKSFRYHCRLIRHQRVHTGERPYECSECGKFFRYNSNLIKHWRNHTGERPYE
CRECGKAFSHKHILVEHQKIHSGERPYECSECQKAFIRKSHLVHHQKIHSEERLVCSM
NVGNSLAKTPTSLNIRDFTMEKVYH"
BASE COUNT 915 a 687 c 759 g 1035 t
ORIGIN
1 gggcgggact tccgccgtcc tcctggtggt ggtcgttttg gttctgtgtg gtgtttcacc
61 aacttcggcc tatggctctg tctgacgtca ccgaagtgac ggaacggaaa agcgcgagaa
121 gcggctcggt tcccaccacg gagaggcggg agtgagtcaa ctgacaagcg ctggggacag
181 tggcgtcctt gtcttgcctt tgtcgctccc gccccgctct tccctggctg ggctggcgga
241 ggccttgctg atgaacctga ctgagggccg tgtggtcttt gaggacgtgg ccatatattt
301 ctcccaggag gagtgggggc accttgatga ggctcagaga ttgctgtacc gtgatgtgat
361 gctggagaat ttggcccttt tgtcctcact aggttcttgg catggagctg aggatgagga
421 gtcaccttca cagcaaggtt tttctgtagg agtgtcagag gttacaactt caaagccctg
481 tctgtccagc cagaaggtcc accctagtga gacatgtggc ccacccttga aagacattct
541 gtgcctggtt gagcacaatg gaattcatcc tgagcaacac atatatattt gtgaggcaga
601 gctttttcag cacccaaagc agcaaattgg agaaaatctt tccagagggg atgattggat
661 accttcattt gggaagaacc acagagttca catggcagag gagatcttca catgcatgga
721 gggctggaag gacttaccag ccacctcatg ccttctccag caccagggcc ctcaaagcga
781 gtggaagcca tacagggaca cagaggacag agaagccttt cagactggac aaaatgatta
841 caaatgtagt gaatgtggga aaaccttcac ctgcagctat tcatttgttg agcaccagaa
901 aatccacaca ggagaaaggt cttatgaatg taacaaatgt gggaaattct ttaagtacag
961 tgccaatttc atgaaacatc agacagttca cactagtgaa aggacttatg agtgcagaga
1021 atgtggaaaa tcctttatgt acaactaccg actcatgaga cataagcgag ttcacactgg
1081 agaaaggcct tatgagtgca acacatgtgg gaaattcttt cggtacagct ccacatttgt
1141 tagacatcag agagttcaca ccggagaaag gccgtatgag tgcagggaat gtgggaaatt
1201 ctttatggac agctccacac tcattaaaca tcagagagtt cacaccggag aaagacctta
1261 taagtgcaat gattgtggga aattttttag gtatatctcc acactcatta gacatcagag
1321 aattcacact ggagaaaggc cttatgagtg cagtgtatgt ggggaattgt ttaggtacaa
1381 ctccagcctt gttaaacatt ggagaaatca cactggagaa aggccttata aatgcagtga
1441 atgtgggaaa tcatttaggt accactgcag gctcattaga caccagagag tccacacggg
1501 agaaaggcct tatgagtgca gcgaatgcgg gaaattcttt cgttacaact ccaacctcat
1561 taaacattgg agaaatcaca ctggagaaag gccttacgag tgcagagagt gtgggaaagc
1621 ctttagccac aagcatatac ttgttgagca ccagaaaatc cacagtggag aaagacctta
1681 tgagtgcagc gaatgccaga aggcctttat tagaaagtct cacctggttc atcaccagaa
1741 aatccacagt gaagagaggc ttgtgtgctc catgaatgtg gggaattctt tagctaaaac
1801 tccaacctca ttaaacatca gagatttcac aatggagaaa gtttaccatt gactattgta
1861 attgggtagt aatgttatat aaattccaca tttttatgca actaatctcc agaacatttt
1921 tcctcttacc aagaagtaaa atgctgtacc cattaacaac aactcattcc ccttccctac
1981 ttccccagaa atgtctcaac tatatttcta tactctatgg tacttatatg aggtaccaat
2041 agatatctat gaatttgata tatatttgta cctcatataa gtggattcta cagtatttat
2101 cttttgagac tggcttattt cacttaggat aaggtcttca cggttcaccc atgttgtata
2161 atgtgtcaga atatccttcc tttttaggtg aaataatatt ctatggtatt tatataccac
2221 atttatttat ccattcatct gttagtggat acttgggcta cttccacctt ttgcctattg
2281 aaataatgct gctatgaaga tgagtgtaca agtgtctatt caagattcta ctttcaattc
2341 ttatagggta tatactcaga aatggtggtg ctggatcata taggatttct attttttttt
2401 tttgtttgtt tttgagacag agtcttgctc tgtcacccag gctggagtgc agtgctgtga
2461 tcttggctca ctgcaagctc cgcctcccag gttcatgcca ttctcctgcc tcaccctccc
2521 gagtagctgg gactacaggt gcctgccacc acgcctggct aatttttttg tatttttagt
2581 agagacgggg tttcaccgtg ttagccagga tggtcctgat ctcctgacct tgtgatctgc
2641 ctgccttggc ctctcaaagt gctgggatta cgggcgtgag ccaccgcgcc tggccaggat
2701 ttctattttt aatatttttg ggaaaatttt tccatagtac ctgtgccatt ttacattccc
2761 accagcagtg cacaaggatt gcaatctata tacatcctca ccaacattgt tcattttcta
2821 tttctgtttt tggggttttt tgtagtgcct tttgttttgg atagcagcta tcttgttgga
2881 tgtgaggtgg aatctatagt gtctttcatt tttattttgt gaatgattaa tgatgttgag
2941 gatcttttca tgtgcttgtt aggcatttgt gtatctggaa aaatattcaa gtcttttttt
3001 tccattttta atgggactat ttgctttttg ttgttgagtt gtagttcttt atacattctg
3061 gatattaact ccttaccaaa tatatgcttt ttacatatta cctcccagtc cataggttgc
3121 tttttcgctc tgttgattgt gtcctttgat gaaattttaa gttttgatgt actgttgact
3181 ctttctgtct gtgggttctg tattcatgga tcgaagcaac catggatcaa aagtatttgg
3241 agcatccatg gattgcagtg atcattaatc aaaaatattt ggaaaacaaa aagggtagtt
3301 gcatctgtac taaacatgaa cagacatttt ttcttgtcat tattccctaa actatatagt
3361 ataataaata tttacatagc aaaaaaaaaa aaaaaa
//