LOCUS BC030625 2916 bp mRNA linear HUM 28-JUL-2005
DEFINITION Homo sapiens UDP-N-acetyl-alpha-D-galactosamine:polypeptide
N-acetylgalactosaminyltransferase-like 2, mRNA (cDNA clone
IMAGE:4826118), complete cds.
ACCESSION BC030625
VERSION BC030625.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2916)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2916)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (13-MAY-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 46 Row: n Column: 5
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..2916
/db_xref="H-InvDB:HIT000092178"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4826118"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..2916
/gene="GALNTL2"
/gene_synonym="GALNT13"
/gene_synonym="GALNT15"
/gene_synonym="GALNT7"
/db_xref="GeneID:117248"
CDS 150..740
/gene="GALNTL2"
/gene_synonym="GALNT13"
/gene_synonym="GALNT15"
/gene_synonym="GALNT7"
/codon_start=1
/product="GALNTL2 protein"
/protein_id="AAH30625.1"
/db_xref="GeneID:117248"
/translation="MERLQLQRRLGCRTFHWFLANVYPELYPSEPRPSFSGKLHNTGL
GLCADCQAEGDILGCPMVLAPCSDSRQQQYLQHTSRKEIHFGSPQHLCFAVRQEQVIL
QNCTEEGLAIHQQHWDFQENGMIVHILSGKCMEAVVQENNKDLYLRPCDEKPASSGVL
TRSMLWMNDECQCQKEKRILAIKIQLQVNLKSLYIS"
BASE COUNT 845 a 641 c 644 g 786 t
ORIGIN
1 agcggagtgg cgcattcccg gaggaaggtc atgtaccagt taaacgccac cgttttgcct
61 cttagtgcac atgcttgagc ccacttgccc aactcctgag atcatatcgg gaagctgatc
121 accaatttca ggctgagaag ccagactgca tggaacgctt gcagctgcaa aggagactgg
181 gttgtcggac attccactgg tttctggcta atgtctaccc tgagctgtac ccatctgaac
241 ccaggcccag tttctctgga aagctccaca acactggact tgggctctgt gcagactgcc
301 aggcagaagg ggacatcctg ggctgtccca tggtgttggc tccttgcagt gacagccggc
361 agcaacagta cctgcagcac accagcagga aggagattca ctttggcagc ccacagcacc
421 tgtgctttgc tgtcaggcag gagcaggtga ttcttcagaa ctgcacggag gaaggcctgg
481 ccatccacca gcagcactgg gacttccagg agaatgggat gattgtccac attctttctg
541 ggaaatgcat ggaagctgtg gtgcaagaaa acaataaaga tttgtacctg cgtccgtgtg
601 atgaaaagcc cgccagcagt ggcgttttga ccagatcaat gctgtggatg aacgatgaat
661 gtcaatgtca gaaggaaaag agaattttgg ccatcaaaat ccagctccaa gtgaacttaa
721 agagcttata tatttcatga agctgatcct tttgtgtgtg tgctcctggt gttaggagag
781 aaaaaagctc tatgaaagaa tataggaagt ttctcctttt cacaccttat ttcattgact
841 gctggctgct ttaaaaaaaa aaaaaggatc cattgtaccg ttgtcttcat cactgggaaa
901 tgattattac atagtacaga agattctttg tttttctcca ctgagcactt aacaattgct
961 ttctctctgg cctggacatt ctctggcagc acctccagga tacataaatt caatggatca
1021 atttatttgt cttcaaatgg ccttaacttg gattgtctgt ttggccaacc atgaaaatta
1081 aagagtgaag cagatgtaat ggcctgacat tccaaaaact ctgaattggg tttattagca
1141 caaatgttgt gttcatttgt tgagccatat ctcagaagaa ggaaagggag ctacagaaag
1201 gaggtttagg attgcagaga agatgcaaga gcactttggc ccaattctcc agctcaaccc
1261 agcagctgaa aagcttcaag agatctagga aaagacattt tcatgttaat gagaatttcc
1321 accattgtag agaatttcct tcctactgag aatctacctc tattccccct gccctagctc
1381 ttctctaact tggttaacca taaccataac cagattccct tgcaatcgat ttctctttag
1441 tcgttggtgt tagaagtacc agcacaattt gagcattccc attaacaaag gtgttcacag
1501 ttgagaaact ctcctgccgg gcgcggtggc tcatgcctgt aattccagca ctttgggagg
1561 cagagttggg aggatcacct gatgtcaggg gtttgagacc agcctggtca acattgcaaa
1621 accttgtctc tactaaaaat acaaaaatta gctgggcatg gtggcgcata cctgtaatcc
1681 cagctacttg ggaggctgag gcaagagaat cgcttgaacc caggaggcag aggttgcagt
1741 gagctgagat catgccattg cactccaacc tgggtgacag agtgagactc catctcaaaa
1801 aaaaaaaaaa gagagaaact ctcctgatgc cctgttacag ggtttgcact gactggagca
1861 gaaacagcaa cctttctaaa aaagcaaacc tttttcctgg gaggaaaatg ccagagcctg
1921 agccaaaatt cttatgacag gtaacatttg ggtgttaatg tccatgagag ctgacagggc
1981 catctctgag cccatataac tgtctggaac ccccaaatgt gtccacaggt tgaatgtcca
2041 tgagtgtggg aagaacacgg ctcatctgga gcacagctga ggctagtaag agctaaatga
2101 ctttccttgc tatggcttgg cttacctgaa ttagctgtaa gagttgccga atgggatggg
2161 ttctgctatt taataaacag cattcatatt catttttccc cagatggagt tacctacctt
2221 tccacatggt cagcttagaa atcttcccct aaagatgcta atctcctttg ggctgtctca
2281 gaacacagta tccttcaaat aagaaaaact gagtgggaag tgcagtgttt ccaaacaata
2341 cctatcataa ctacgtattc attgtctacc tgctaagtca agggttcact gcatttctcc
2401 ttcctcagaa tacactctgg acctgtgctg tctaatatgg tagccactaa caaaatgtgg
2461 ccattttgat ggaaatccat taaaatcaaa gaaaatttaa aactcaattc ctcaactggg
2521 ctggccacat ttcaaatgct cactacccac ctgtggctag ggtctacttc tactgtattg
2581 gcgagcatgg atatagaaca tttcatcaca gttctgttgg accaatctag atagattcat
2641 tatcccatct agagaagaga ctttagtcac tgtcttcttg cttcagaccc atctatattt
2701 aaaacaaatt tccctaaatc ctgagactga gacggagcta caaattctca gatggcgacc
2761 gtgtaaatgg tattagcggc tgaagaaaaa aaatttttca agacctctgt tttttaactg
2821 aactttatca ttggcattgt gggtctttga agttgctggg ataaattaat ataattaaat
2881 aaaagactga atttaattgc aaaaaaaaaa aaaaaa
//