LOCUS BC030600 1923 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens nuclear receptor subfamily 6, group A, member 1, mRNA
(cDNA clone MGC:26779 IMAGE:4837639), complete cds.
ACCESSION BC030600
VERSION BC030600.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1923)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1923)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (13-MAY-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 34 Row: m Column: 3.
FEATURES Location/Qualifiers
source 1..1923
/db_xref="H-InvDB:HIT000041065"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:26779 IMAGE:4837639"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..1923
/gene="NR6A1"
/gene_synonym="GCNF1"
/gene_synonym="NR61"
/gene_synonym="RTR"
/db_xref="GeneID:2649"
/db_xref="HGNC:HGNC:7985"
/db_xref="MIM:602778"
CDS 199..1626
/gene="NR6A1"
/gene_synonym="GCNF1"
/gene_synonym="NR61"
/gene_synonym="RTR"
/codon_start=1
/product="nuclear receptor subfamily 6, group A, member 1"
/protein_id="AAH30600.1"
/db_xref="GeneID:2649"
/db_xref="HGNC:HGNC:7985"
/db_xref="MIM:602778"
/translation="MERDEPPPSGGGGGGGSAGFLEPPAALPPPPRNGFCQDELAELD
PGTNDRAEQRTCLICGDRATGLHYGIISCEGCKGFFKRSICNKRVYRCSRDKNCVMSR
KQRNRCQYCRLLKCLQMGMNRKAIREDGMPGGRNKSIGPVQISEEEIERIMSGQEFEE
EANHWSNHGDSDHSSPGNRASESNQPSPGSTLSSRSVELNGFMAFREQYMGMSVPPHY
QYIPHLFSYSGHSPLLPQQARSLDPQSYSLIHQLLSAEDLEPLGTPMLIEDGYAVTQA
ELFALLCRLADELLFRQIAWIKKLPFFCELSIKDYTCLLSSTWQELILLSSLTVYSKQ
IFGELADVTAKYSPSDEELHRFSDEGMEVIERLIYLYHKFHQLKVSNEEYACMKAINF
LNQDIRGLTSASQLEQLNKRYWYICQDFTEYKYTHQPNRFPDLMMCLPEIRYIAGKMV
NVPLEQLPLLFKVVLHSCKTSVGKE"
BASE COUNT 469 a 495 c 539 g 420 t
ORIGIN
1 agcgtgggtg ctgagggggc gcggcgcgga ggggcgcgga gcggcgcgga gccgggcggc
61 tcggggccca gagagagccg cggccgggag ctcgcgggct cctgacaacc tcctcccctc
121 ggcggacgac gaccacggcg actagggcgc cggtcatggc ggagcaacaa acccggcgcg
181 gaccctaggc accaccgcat ggagcgggac gaaccgccgc ctagcggagg gggaggcggc
241 gggggctcgg cggggttcct ggagcctccc gccgcgctac ctccgccgcc gcgcaacggt
301 ttctgtcagg atgaattggc agagcttgac ccaggcacta atgatcgggc tgaacaacga
361 acctgtctca tttgtgggga ccgcgctaca ggcttgcact atgggatcat ctcctgtgag
421 ggctgcaaag ggtttttcaa gcggagcatt tgcaacaaac gggtatatcg atgcagtcgt
481 gacaagaact gtgtcatgtc tcggaagcag aggaacaggt gccagtactg ccgcctgctc
541 aaatgcctcc agatggggat gaaccggaag gctatcagag aagatggcat gcctggaggc
601 cggaataaga gcattgggcc agtccagata tcggaagaag aaatcgaaag gatcatgtct
661 gggcaggagt ttgaggaaga ggccaatcac tggagcaacc atggtgatag tgaccacagt
721 tcccctggga acagggcttc ggagagcaac cagccctcac caggctccac actgtcttcc
781 aggtctgtgg aactgaatgg attcatggcc ttcagggaac agtacatggg aatgtctgtg
841 cctccacatt accaatatat accgcacctt tttagctatt ctggccactc accacttctg
901 ccccaacaag ctcgcagcct ggatccccag tcatacagtc tgattcacca gctgttatca
961 gccgaggacc tggaaccatt gggcacgccc atgttgattg aagatggata cgctgtgaca
1021 caggcagaac tatttgccct gctttgccgc ctggccgacg agctgctctt taggcagatt
1081 gcctggatca agaaactgcc tttcttctgc gagctctcaa tcaaggatta cacgtgcctc
1141 ttgagctcta cgtggcagga gctaatcctg ctgtcttccc tcaccgttta cagcaagcag
1201 atctttgggg aactggctga tgtcactgcc aagtactcgc cctccgatga agaactacac
1261 agatttagtg atgaagggat ggaggtgatc gagcggctca tctacctcta tcacaagttc
1321 catcagctaa aggtcagcaa cgaggagtat gcttgcatga aagcaattaa cttcctaaat
1381 caagatatca ggggtctgac cagtgcctca cagctggaac aattgaataa acgatactgg
1441 tacatttgcc aggattttac tgaatataaa tacacacatc agccgaaccg ctttcctgat
1501 ctcatgatgt gcttacctga gattcgatat attgcaggaa agatggtgaa tgtgcccctg
1561 gagcagctgc ccctcctctt taaggtggtg ctgcattcct gcaagaccag tgtgggcaag
1621 gaatgacctg ttccaggcgc cctcctcagg ccaaccacag cgtcttgggt gggcaggaca
1681 ggctctggag ggaaaagcca gagagaccaa gatggaggct gtggagcagc atttcccgtt
1741 gcctccatag caagaagagt ttttgtttgt ttgtctgttt ttttaacctc atttttctat
1801 atatttattt cacgacagag ttgaatgtat ggccttcaac atgatgcaca tgcttttgtg
1861 tgaatgcagc caatgcattt tcttacagtt tacagaatgt gaagacgaaa aaaaaaaaaa
1921 aaa
//