LOCUS BC030544 2511 bp mRNA linear HUM 26-JUN-2007
DEFINITION Homo sapiens strawberry notch homolog 1 (Drosophila), mRNA (cDNA
clone IMAGE:5001589), partial cds.
ACCESSION BC030544
VERSION BC030544.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2511)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2511)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (07-MAY-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 64 Row: c Column: 20
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 33620762.
FEATURES Location/Qualifiers
source 1..2511
/db_xref="H-InvDB:HIT000092141"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5001589"
/tissue_type="Placenta, choriocarcinoma"
/clone_lib="NIH_MGC_10"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..>2511
/gene="SBNO1"
/gene_synonym="MOP3"
/gene_synonym="Sno"
/db_xref="GeneID:55206"
/db_xref="HGNC:HGNC:22973"
CDS 138..>2511
/gene="SBNO1"
/gene_synonym="MOP3"
/gene_synonym="Sno"
/codon_start=1
/product="SBNO1 protein"
/protein_id="AAH30544.1"
/db_xref="GeneID:55206"
/db_xref="HGNC:HGNC:22973"
/translation="MVEPGQDLLLAALSESGISPNDLFDIDGGDAGLATPMPTPSVQQ
SVPLSALELGLETEAAVPVKQEPETVPTPALLNQQPPSTTTFVLNQINHLPPLGSTIV
MTKTPPVTTNRQTITLTKFIQTTASTRPSVSAPTVRNAMTSAPSKDQVQLKDLLKNNS
LNELMKLKPPANIAQPVATAATDVSNGTVKKESSNKEGARMWINDMKMRSFSPTMKVP
VVKEDDEPEEEDEEEMGHAETYAEYMPIKLKIGLRHPDAVVETSSLSSVTPPDVWYKT
SISEETIDNGWLSALQLEAITYAAQQHETFLPNGDRAGFLIGDGAGVGKGRTIAGIIY
ENYLLSRKRALWFSVSNDLKYDAERDLRDIGAKNILVHSLNKFKYGKISSKHNGSVKK
GVIFATYSSLIGESQSGGKYKTRLKQLLHWCGDDFDGVIVFDECHKAKNLCPVGSSKP
TKTGLAVLELQNKLPKARVVYASATGASEPRNMAYMNRLGIWGEGTPFREFSDFIQAV
ERRGVGAMEIVAMDMKLRGMYIARQLSFTGVTFKIEEVLLSQSYVKMYNKAVKLWVIA
RERFQQAADLIDAEQRMKKSMWGQFWSAHQRFFKYLCIASKVKRVVQLAREEIKNGKC
VVIGLQSTGEARTLEALEEGGGELNDFVSTAKGVLQSLIEKHFPAPDRKKLYSLLGID
LTAPSNNSSPRDSPCKENKIKKRKGEEITREAKKARKVGGLTGSSSDDSGSESDASDN
EESDYESSKNMSSGDDDDFNPFLDESNEDDENDPWLIRKDHKKNKEKKKKK"
BASE COUNT 817 a 481 c 585 g 628 t
ORIGIN
1 ccacgcgtcc ggggaggtag gcagagcagg acgccgctgc cgccgccgcc accgccgcct
61 ccgctccagt cgcctctggt ccttcaaact cacacctccc gggaggagct gtcctggcgc
121 cgggtcccgc ggggaaaatg gtggagccag ggcaagattt actgcttgct gctttgagtg
181 agagtggaat tagtccgaat gacctctttg atattgatgg tggagatgca gggcttgcaa
241 ctccaatgcc taccccgtca gttcagcagt cagtgccact tagtgcatta gaactaggtt
301 tggagaccga agcagcagtt cctgttaaac aagaaccaga gactgtacct actccagcac
361 tattaaatca gcagcctcca tctactacaa catttgtgct gaatcaaata aatcatcttc
421 cacccttggg atctacaatt gtaatgacta aaacaccacc tgtaacaacc aacaggcaaa
481 ccatcacttt aactaagttt atccagacta ctgcaagcac acgcccgtca gtctcagcac
541 caacagtacg aaatgccatg acctctgcac cttcaaaaga ccaagttcag cttaaagatc
601 tactgaaaaa taatagtctt aatgaactga tgaaactaaa gccacctgct aatattgctc
661 agccagtagc aacagcagct actgatgtaa gcaatggtac agtaaagaaa gagtcttcta
721 ataaagaagg agctagaatg tggataaacg acatgaaaat gaggagtttt tccccaacca
781 tgaaggttcc tgttgtaaaa gaagatgatg aaccagagga agaagatgaa gaagaaatgg
841 gtcatgcaga aacctatgca gaatacatgc caataaaatt aaaaattggc ctacgtcatc
901 cagatgctgt agtggaaacc agctctttat ccagtgttac tcctcctgat gtttggtaca
961 aaacatccat ttctgaggaa accattgata atggctggtt atcagcattg cagcttgagg
1021 caattacata tgcagcccag caacatgaaa ctttcctacc taatggagat cgtgctggct
1081 tcttaatagg tgatggtgcc ggtgtaggaa aaggaaggac gatagcagga atcatctatg
1141 aaaattattt gttgagtaga aaacgagcat tgtggtttag tgtttcaaat gacttaaagt
1201 atgatgctga aagagattta agggatattg gagcaaaaaa cattttggtt cattcgttaa
1261 ataagtttaa atacggaaaa atttcttcca aacataatgg gagtgtgaaa aagggtgtta
1321 tttttgctac ttactcttca cttattggtg aaagccagtc tggcggcaag tataaaacta
1381 ggttaaaaca acttctgcat tggtgcggtg atgacttcga tggagtgata gtgtttgatg
1441 agtgtcataa agccaaaaac ttatgtcctg ttggttcttc aaagccaacc aagacaggct
1501 tagcagtttt agagcttcag aacaaattgc caaaagccag agttgtttat gctagtgcaa
1561 ctggtgcttc tgaaccacgc aacatggcct atatgaaccg tcttggcata tggggtgagg
1621 gtactccatt tagagaattc agtgatttta ttcaagcagt agaacggaga ggagttggtg
1681 ccatggaaat agttgctatg gatatgaagc ttagaggaat gtacattgct cgacaactga
1741 gctttactgg agtgaccttc aaaattgagg aagttcttct ttctcagagc tacgttaaaa
1801 tgtataacaa agctgtcaag ctgtgggtca tcgccagaga gcggtttcag caagctgcag
1861 atctgattga tgctgagcaa cgaatgaaga agtccatgtg gggtcagttc tggtctgctc
1921 accagaggtt cttcaaatac ttatgcatag catccaaagt taaaagggtt gtgcaactag
1981 ctcgagagga aatcaagaat ggaaaatgtg ttgtaattgg tctgcagtct acaggagaag
2041 ctagaacatt agaagctttg gaagagggcg ggggagaatt gaatgatttt gtttcaactg
2101 ccaaaggtgt gttgcagtca ctcattgaaa aacattttcc tgctccagac aggaaaaaac
2161 tttatagttt actaggaatc gatttgacag ctccaagtaa caacagttcg ccaagagata
2221 gtccttgtaa agaaaataaa ataaagaagc ggaaaggtga agaaataact cgagaagcca
2281 aaaaagcacg aaaagtaggt ggccttactg gtagcagttc tgacgacagt ggaagtgaat
2341 ctgatgcctc tgataatgaa gaaagtgact atgagagctc taaaaacatg agttctggag
2401 atgatgacga tttcaaccca tttttagatg agtctaatga ggatgatgaa aatgatccct
2461 ggttaattag aaaagaccac aagaaaaaca aagagaaaaa aaaaaaaaaa a
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