LOCUS BC030519 3044 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens cryptochrome 1 (photolyase-like), mRNA (cDNA clone
MGC:40475 IMAGE:5169081), complete cds.
ACCESSION BC030519
VERSION BC030519.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3044)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3044)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (07-MAY-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 64 Row: e Column: 17
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 19923246.
FEATURES Location/Qualifiers
source 1..3044
/db_xref="H-InvDB:HIT000050990"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:40475 IMAGE:5169081"
/tissue_type="Brain, adult medulla"
/clone_lib="NIH_MGC_119"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..3044
/gene="CRY1"
/db_xref="GeneID:1407"
/db_xref="HGNC:HGNC:2384"
/db_xref="MIM:601933"
CDS 570..2330
/gene="CRY1"
/codon_start=1
/product="cryptochrome 1 (photolyase-like)"
/protein_id="AAH30519.1"
/db_xref="GeneID:1407"
/db_xref="HGNC:HGNC:2384"
/db_xref="MIM:601933"
/translation="MGVNAVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGS
SNVGINRWRFLLQCLEDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDS
EPFGKERDAAIKKLATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKM
EPLEIPVETITSEVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEAL
TRLERHLERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKV
KKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGR
TGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSI
NAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNA
PEGIQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQIYQQLSRYRGLGLLASVPSNPN
GNGGFMGYSAENIPGCSSSGSCSQGSGILHYAHGDSQQTHLLKQGRSSMGTGLSGGKR
PSQEEDTQSIGPKVQRQSTN"
BASE COUNT 856 a 656 c 701 g 831 t
ORIGIN
1 cgggaccggt caccggccgg caaccgtcca gcggcctcga ccaccgcctc tagcctccgt
61 tcccggtcct ttctcccggg ccgagagaca gcgtcgccga caggggctca ttcccctccg
121 gttctcctcg gtgactcacc tcgggcgggc cgttttgtct ttaggggccg ccttggtggg
181 gcgaggtttc cttgacgaat ctcctggggc cgtccgtgcc ggctcgggcc gtcgtggcga
241 ctcgagctcc tggaacttgc tcaggctccg gaggtccgag gccctcgaag ttatgcgtcg
301 cctccaggcg gttgcggcgg gcgcgggctc ctaaagggcg tcacacccgg actccgccga
361 ctaggcaacc tccattcatc tttccactgc gcctccagcg cccccgcctt ctccggtccc
421 ctcctcggag tcattttttc ctgttccccc tctgccgccc tttcctcacg ccccgggtga
481 ggcaattctc ttggaagcga aggtgtcggc tatgagccgg agcctccttc cttgaatttc
541 tccgtggagg acccgccgcg ccccccggca tgggggtgaa cgccgtgcac tggttccgaa
601 aggggctccg gctccacgac aaccccgccc tgaaggagtg cattcagggc gccgacacca
661 tccgctgcgt ctacatcctg gacccctggt tcgccggctc ctccaatgtg ggcatcaaca
721 ggtggcgatt tttgcttcag tgtcttgagg atcttgatgc caatctacga aaattaaact
781 cccgtctgtt tgtgattcgt ggacaaccag cagatgtgtt tcccaggctt ttcaaggaat
841 ggaacattac taaactttca attgagtatg attctgagcc ctttggaaag gaacgagacg
901 cagctattaa gaaactggca actgaagctg gagtagaagt cattgtaaga atttcacata
961 cattatatga cctagacaag atcatagaac tcaatggtgg acaaccgcct ctaacttata
1021 aaagattcca gactctcatc agcaaaatgg aaccactaga gataccagta gagacaatta
1081 cttcagaagt gatagaaaag tgcacaactc ctctgtctga tgaccatgat gagaaatatg
1141 gagtcccttc actggaagag ctaggttttg atacagatgg cttatcctct gcagtgtggc
1201 caggcggaga aactgaagca cttactcgtt tggaaaggca tttggaaaga aaagcttggg
1261 tggcaaattt tgaaagacct cgaatgaatg cgaattctct gcttgcaagc cctactggac
1321 ttagtcctta tctccgattt ggttgtttgt catgtcgact gttttacttc aaactaacag
1381 atctctacaa aaaggtaaag aagaacagtt cccctcccct ttccctttat gggcaactgt
1441 tatggcgtga atttttctat acagcagcaa caaataatcc acgctttgat aaaatggaag
1501 gaaaccctat ctgtgttcag attccttggg ataaaaatcc tgaggcttta gccaaatggg
1561 cggaaggccg gacaggcttt ccatggattg atgccatcat gacacagctt cgtcaggagg
1621 gttggattca tcatctagcc aggcatgcag ttgcttgctt cctgacacga ggggacctgt
1681 ggattagttg ggaagaagga atgaaggtat ttgaagaatt attgcttgat gcagattgga
1741 gcataaatgc tggaagttgg atgtggctgt cttgtagttc cttttttcaa cagttttttc
1801 actgctattg ccctgttggt tttggtagga gaacagatcc caatggagac tatatcaggc
1861 gttatttgcc tgtcctaaga ggcttccctg caaaatatat ctatgatccc tggaatgcac
1921 cagaaggtat ccaaaaggta gccaaatgtt tgataggagt taattatcct aaaccaatgg
1981 tgaaccatgc tgaggcaagc cgtttgaata tcgaaaggat gaaacagatc tatcagcagc
2041 tttcacgata tagaggacta ggtcttctgg catcagtacc ttctaatcct aatgggaatg
2101 gaggcttcat gggatattct gcagaaaata tcccaggttg tagcagcagt ggaagttgct
2161 ctcaagggag tggtatttta cactatgctc atggcgacag tcagcaaact cacctgttga
2221 agcaaggaag aagctccatg ggcactggtc tcagtggtgg gaaacgtcct agtcaggaag
2281 aggacacaca gagtattggt cctaaagtcc agagacagag cactaattag aaaacattca
2341 ggaggaatac tgttgcagct gaaattggtg gggagttcaa tacttttcaa ttaagttatt
2401 taaaaatatt cttcattgat ggaaagcagt tacatattga aatatgttgt ttctaatgac
2461 atttctgtgg tttttaactt tttaatgaat ttcacagagt acaattggta atttgtatat
2521 aaagaacttg gcaagagaat ttgcttaatg taaatataaa cagtcacaat tagtatagac
2581 ccatcgatat atttttgata atttttcatg tatggtaaag ttaaaatgac aaattgatat
2641 tctgatataa aactcaaagt tttgaagtca gtgggaaaaa aggaggtttt tagactttct
2701 taaaagacgt taaaatttta ggacagaatt ttcttgatgt tgtttgatct aactttgcac
2761 tctttgataa taatgtttta gataatgtgc gtaatccaaa ttggtattgt agcctctgtt
2821 aacacagaca gtatatgttt taaactttga tgtaaacctt tttagaccca aacttgtgga
2881 agtatcatgt gttaagttct ctgtctctgt ttctttgttc atttattact aaaatgaact
2941 tgttattaaa gtatatgcaa ataaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
3001 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaa
//