LOCUS BC030426 2430 bp mRNA linear HTC 19-NOV-2003
DEFINITION Mus musculus brain expressed, associated with Nedd4, mRNA (cDNA
clone IMAGE:5368145), with apparent retained intron.
ACCESSION BC030426
VERSION BC030426.1
KEYWORDS HTC.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 2430)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2430)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (07-MAY-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: The Cepko Laboratory
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 65 Row: h Column: 19
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis
This clone has the following problem: retained intron.
FEATURES Location/Qualifiers
source 1..2430
/organism="Mus musculus"
/mol_type="mRNA"
/db_xref="taxon:10090"
/clone="IMAGE:5368145"
/tissue_type="Eye, retina, mouse strain C57Bl\6"
/clone_lib="NIH_MGC_94"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
BASE COUNT 510 a 796 c 689 g 435 t
ORIGIN
1 ccacgcgtcc gggtgtgccg gcctccctac atccctcggc ctccccgccg ccctgccccg
61 cccgcccgcc tgcccgctgc ccgacgctgt gtgggtgtcg ggctggctgt gcgcagaggg
121 gcgcggctcg ccgctcccac ctcctccgcg tccccatctc agcaatgacc cgggccgtgg
181 cgccaccgag ctgagaccgg ggagccgcgc cgccgccgag gagggcccaa gagggtgacg
241 gtggaacgag cggcggcgcg gggaccgcga cggagggacg ggcggggctg ctgttcctgc
301 tgcagggcag ggcagggcgg ggcagggccc cggagaccgc cggcggctgt ttgcccgcgg
361 atcgagggcg cgggtccgtt ctgcccggcc ccgccggtgc gccccgcccc tgcacgcaca
421 gcaggcccag gcgaagcggc tgggacgccc cagcccagcc ggagcgccac ggcatccgag
481 cgggagccgg agcccgagcg ggaccggagc tggagccgaa gctggagccg gcactgcggc
541 gcacggagcg gagcgccgca gccaagccga tagcacgata caaccgtacc agctatttct
601 accctaccac gttctccgag agctctgagc acagccacct gctggtgtct ccggtgctgg
661 tggcgagcgc tgtcataggt gtggtcatca ctctctcctg catcaccatc attgtgggaa
721 gcatcagaag ggacagacag gcccggatcc agcgacacca ccatcgtcac cgccgccatc
781 atcaccatca ccgccaccgc aggcgccgac accgagaata cgtcgcaggg gtgacatcca
841 tgagagcagg acccgtgtgt ggtccacccc acctgcagcc cagaggaggt ttttcagagg
901 ctatggaagg actgaccttc acgagtcttt gtgcatctgg aggacacaca cacagccgtt
961 ctagccccag gatgccctat gcctgcagcc ctgctgagga ctggccaccg cccttggacg
1021 tcagctccga gggggatgtg gatgtcacag tgctctggga gctgtaccca gattctccac
1081 caggctatga ggaatgcatg ggaccagggg ccactcagct gtatgtcccc acggatgcac
1141 caccgcccta ctccatgact gactcctgtc ccaggctgaa tggcgccctt gactcagaca
1201 gcggccagag ccgcagccac cgtcagcagg agcagaggac ccggggtcag agcagactcc
1261 acactgtctc catggacaca ctgccacctt atgaagctgt gtgtgggaca ggctctccat
1321 ctgacctgct gccattgcca ggaccagaac catggccaag taactcccag ggctcaccca
1381 tcccaaccca ggctccgatg cccagccctg aaaggattgt gtgagtggcc aagctcataa
1441 attccgctgg tctttccagg ctaccctctc tcctccaggc atacaggtgc acacacaacc
1501 catgcacatg catatatatg actatcaata tatactgaca tatccccaag tgcttacact
1561 gacacaaccc acacatatgt agacacctgc atatgcacat gtcccactac tacacaaact
1621 cacctgggaa ggttttcttt ggatgaggtg ttccctacat ggtatctctt cctccccagc
1681 ctggtgcctg gtggccgtgc ctctctgaac agtgctgggc agaggtgaga taggaaaccc
1741 aattttctat cctctcccca gcctcctcta ggctatggcc acaatctgat tctcctgcag
1801 agactgcttg gtcagcttcc tgccataact cctaccccag ggcttatcct attgggagct
1861 gagacaggtc ccaataaggt cccactgtgc actgtgccta tctctcaact ccagggctga
1921 agagccacaa tgtcaccgtc ctgccacttc cgaggtggga gagaaacagg tctggtggct
1981 taggcatgac ctggaggtcc tcacagccca tttagcctgt ctcgatgtcc ttagtgtggc
2041 ggtgctagtg gggttagctc agacacccac cctaagtttc agggggagac aggcccttgg
2101 gcctgtatcg tggaggaaca acacagttct tctaatgtct gtgccaggat tgagagctca
2161 agagaaacaa ggtgtgggca gccccataca cacataatgc ttcctagaca tcactcagag
2221 gaggcacaga agagtccact gctcagtaag tgcccagcca gctctggtga cctgggtgta
2281 agaggtctca gaccaaccaa agagccagcg ctgtcatcca gggtggtaac tcccagctgg
2341 ggactgggct gatgaagtct ggccttgcct ctctgggata tacacagaga caacacacac
2401 acatgtaccc cacaaaaaaa aaaaaaaaaa
//