LOCUS BC030242 2244 bp mRNA linear HUM 19-JUN-2006
DEFINITION Homo sapiens trypsin domain containing 1, mRNA (cDNA clone
MGC:40113 IMAGE:5176098), complete cds.
ACCESSION BC030242
VERSION BC030242.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2244)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2244)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (07-MAY-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 62 Row: e Column: 3
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis, GenomeScan gene prediction.
FEATURES Location/Qualifiers
source 1..2244
/db_xref="H-InvDB:HIT000040992"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:40113 IMAGE:5176098"
/tissue_type="Brain, Lung, Testis, adult, pooled whole"
/clone_lib="NIH_MGC_115"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2244
/gene="TYSND1"
/gene_synonym="MGC34695"
/db_xref="GeneID:219743"
/db_xref="HGNC:HGNC:28531"
CDS 71..1267
/gene="TYSND1"
/gene_synonym="MGC34695"
/codon_start=1
/product="trypsin domain containing 1"
/protein_id="AAH30242.1"
/db_xref="GeneID:219743"
/db_xref="HGNC:HGNC:28531"
/translation="MRRQWGSAMRAAEQAGCMVSASRAGQPEAGPWSCSGVILSRSPG
LVLCHGGIFVPFLRAGSEVLTAAGAVFLPGDSCRDDLRLHVQWAPTAAGPGGGAERGR
PGLCTPQCASLEPGPPAPSRGRPLQPRLPAELLLLLSCPAFWAHFARLFGDEAAEQWR
FSSAARDDEVSEDEEADQLRALGWFALLGVRLGQEEVEEERGLAMAVSPLGAVPKGAP
LLVCGSPFGAFCPDIFLNTLSCGVLSNVAGPLLLTDARCLPGTEGGGVFTARPAGALV
ALVVAPLCWKAGEWVGFTLLCAAAPLFRAARDALHRLPHSTAALAALLPPEVGVPWGL
PLRDSGPLWAAAAVLVECGTVWGSGVAVAPRLVVTCRHVSPREAARVLVRSTTPKHNH
QQHPGQ"
BASE COUNT 394 a 712 c 728 g 410 t
ORIGIN
1 ccgggtaggg gtcctcgctc gctagcttgc tgtttctcgg agaagctccc gagtgtccgg
61 cctagaggcc atgagaaggc agtgggggtc tgccatgagg gcggccgagc aggcgggctg
121 catggtgagc gcctcccggg ccggacagcc cgaggcgggc ccgtggagct gcagcggggt
181 aatcctgagc cgtagcccgg gcctggtgct ttgccacggg ggcatcttcg tccccttcct
241 gcgagctggc agcgaagtcc tgaccgcggc cggcgccgtc ttcctgcctg gcgacagttg
301 cagggacgac ctgcgcctgc acgtgcagtg ggccccaacg gccgcgggtc ccgggggcgg
361 cgcggagcgg ggccgcccag ggctgtgcac gccccagtgc gccagcctcg agcccggccc
421 acctgccccg tcccgcgggc gtcccctgca gccccggctt cctgctgagc tgctgctgct
481 gctgagctgc ccggccttct gggcccactt cgcgcgcctc ttcggggacg aggcagcgga
541 acagtggcgc ttctcgagcg cggcgcggga tgacgaagtg tcggaggacg aggaggcgga
601 tcaactgaga gcgctgggct ggtttgcgct gctgggcgtg cggctaggcc aggaggaggt
661 ggaggaggag cgcgggctag ccatggcggt gtcgcctctc ggggccgtgc ccaagggcgc
721 gccattgctg gtctgcggct cccctttcgg cgccttctgc cccgacatct ttctcaacac
781 gctgagctgc ggggtgctca gcaacgtggc cggcccactg ctgcttaccg acgcacgctg
841 cctgcccggc accgagggcg gcggcgtgtt caccgcgcgg cccgcggggg cgctggtggc
901 gctggtggtg gcgccgctct gttggaaggc cggcgaatgg gtgggcttca cgctgctctg
961 cgccgccgcc ccccttttcc gcgccgcccg cgacgcgctt caccgcctgc cgcacagcac
1021 cgctgccctg gccgcccttc tgccgccaga ggtgggcgtc ccgtggggtc tgcccctccg
1081 agactccggg cccctgtggg cagccgcggc agtgttggtg gagtgcggca ccgtatgggg
1141 ctccggagtg gctgtggcac cccgccttgt agtgacctgt cggcacgtgt cccctcggga
1201 agcagccagg gtcctggtgc gctccaccac ccccaagcat aatcaccagc aacacccggg
1261 acaataatac gggggccacc tacccccacc tgaacttcag cattcccatc acggtgctcc
1321 agccggccct gcagcagtac agccagaccc aagacctagg tggcctccgt gagctggacc
1381 gcgctgctga gccagtcagg gtggtgtggc ggttgcagcg gcccctggca gaggccccgc
1441 ggagcaagct ctgaggctgt gttaccacct ttggaaagaa gagtgacctt tttctgctgt
1501 aggaagtgat gttgaggtga cggtggcctc aggattcagg gcccagcccc tgcaggggcc
1561 caggctgcct ctcatctcca cccactgact gcagactggg ctttgggctc tggggcaaac
1621 ttctcttcag ccccatggat ccttaacctg gcagcccgtt ttggggtgct ttcttgagcc
1681 cccagttctc tgtcccctag cactagactc agctgtattg tttttccttc tggggagccc
1741 actccaactg cacagaagtt ctgggcctga caggtagatt ccagctggaa ggcaggcccg
1801 tgcctggttt tgcgtctgtt cccctgaggg ccatcgtcat cctggagctt caatggggcc
1861 ttggctcctg tctgcctctc agtcagagtc agggctgaca aaggactcag cttccttagc
1921 atctcagcag aaaccttgct ctgaagacca gagacagaag ggacagaaac aggagtgcct
1981 cctgctgtgc caggcccatg ggcagtgcag gcagatccct gaaggtcagc actcctgggt
2041 cttcatatgc caacaggggc gctcttgaca ctgtgccttc attttccagc ccacagcctg
2101 ggtctcaggg atcttgaggg gtagaacatg tctggttggg gcttgggaat aaacatgatc
2161 tattgaaaaa caaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
2221 aaaaaaaaaa aaaaaaaaaa aaaa
//