LOCUS BC030224 1806 bp mRNA linear HUM 06-JUN-2006
DEFINITION Homo sapiens CD48 molecule, mRNA (cDNA clone MGC:34616
IMAGE:5223308), complete cds.
ACCESSION BC030224
VERSION BC030224.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1806)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1806)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (07-MAY-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 49 Row: l Column: 6
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 21361570.
FEATURES Location/Qualifiers
source 1..1806
/db_xref="H-InvDB:HIT000040985"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:34616 IMAGE:5223308"
/tissue_type="Pancreas, Spleen, adult pooled"
/clone_lib="NIH_MGC_120"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1806
/gene="CD48"
/gene_synonym="BLAST"
/gene_synonym="BLAST1"
/gene_synonym="hCD48"
/gene_synonym="mCD48"
/gene_synonym="MEM-102"
/gene_synonym="SLAMF2"
/db_xref="GeneID:962"
/db_xref="HGNC:HGNC:1683"
/db_xref="MIM:109530"
CDS 41..550
/gene="CD48"
/gene_synonym="BLAST"
/gene_synonym="BLAST1"
/gene_synonym="hCD48"
/gene_synonym="mCD48"
/gene_synonym="MEM-102"
/gene_synonym="SLAMF2"
/codon_start=1
/product="CD48 protein"
/protein_id="AAH30224.1"
/db_xref="GeneID:962"
/db_xref="HGNC:HGNC:1683"
/db_xref="MIM:109530"
/translation="MCSRGWDSCLALELLLLPLSLLVTSIQGHLVHMTVVSGSNVTLN
ISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGALYISKVQKE
DNSTYIMRVLKKTGNEQEWKIKLQVLGESGEPKSKSPLQWPQMDHCRASWEAWGTLGE
EERKTSGQV"
BASE COUNT 571 a 342 c 408 g 485 t
ORIGIN
1 caactgtctc ctgcgttgct gggaagttct ggaaggaagc atgtgctcca gaggttggga
61 ttcgtgtctg gctctggaat tgctactgct gcctctgtca ctcctggtga ccagcattca
121 aggtcacttg gtacatatga ccgtggtctc cggcagcaac gtgactctga acatctctga
181 gagcctgcct gagaactaca aacaactaac ctggttttat actttcgacc agaagattgt
241 agaatgggat tccagaaaat ctaagtactt tgaatccaaa tttaaaggca gggtcagact
301 tgatcctcag agtggcgcac tgtacatctc taaggtccag aaagaggaca acagcaccta
361 catcatgagg gtgttgaaaa agactgggaa tgagcaagaa tggaagatca agctgcaagt
421 gcttggtgag tcaggggagc caaagagcaa atccccactc cagtggcccc agatggacca
481 ctgtagggct tcctgggagg catggggcac tctcggggag gaggagagaa aaacctcagg
541 acaggtttga ttcatttttc cttgatccaa ttctatttgg gagtgagcct aggtcaacag
601 atatccaaat taacaatctt aggacattta acacctcttc tgaagttagt gagtctaagc
661 tttgaagaga aggaaaacta gagatttttc ctatttcctt cattttgtcc tgtgatcaac
721 ctaaatcagc tcagctcatc ttgattatat ctccgaaatt aggcttcatt ggacttaaga
781 aaaaagagaa tgtattaata taaagaatgg ggcaggagtt atcaggagaa tttttcaact
841 ttcataatgg gcaggacaaa aaaacttcca ctcatagctc cagtctaacc agtgtatatg
901 gaataaggac tcaggcatta tacctggagc cagacagact tgggttcaaa actggtcagt
961 tgctcactag ctgtgcagcc ttgaaaaaag atcttcacat ctctgtgccc atattaggta
1021 agattctttt gatagcaaat aacagaaact aattcaatgt acctttacca aaaaaggaga
1081 atttagttta agaaactagg gctatttaaa gcaattcaaa gagtttaaaa gagctaggaa
1141 gggcttaagg ggagaagatt gaaaaccagg ttcgggccag aacccctagc ttcaggaatc
1201 tgtggactgt gcctatggat ttggattcct gccattttac acatgttatc tctcaaaact
1261 tagacttttg ctcctctgag tttcaattct cagggcaatt taaagagaga gaaactgata
1321 gtcccaattt agttcaggtg tgtgtacctg atctaaacat ttttggtgaa aggatcagat
1381 tatagggcag aaacatggat atggggaggg gctccagggg ttggggtatg caattcttgt
1441 agaagagcgg ggctaaataa tccaagagtg gtgttccctt gagagccttg ggttcttcat
1501 catattatga gaataattct acttaccttt caggatgtta ttagagtcaa agtagataag
1561 gaaagtgaaa acatttttta aaatgtcaaa acatgcaaat gaagagtgtt gtatacattc
1621 aagttccacc agccagacag tccctgatcc aagcagtcag attccccttc taactcttct
1681 tccatgtcat atgggctgaa aattcagaaa gtcctgggaa caaaaagatt caaggtctct
1741 tacagtggtg ttctggttaa caagctctac aagatttaaa aaaaaaaaaa aaaaaaaaaa
1801 aaaaaa
//